PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G01950.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 248aa MW: 27208.2 Da PI: 6.6796

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G01950.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.3	3e-53	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk+ OBART06G01950.1 11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQErcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 103 69**************************.9***********953444443456******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s +++ +g++ktLvfykgrap+g+k+dW+mheyrl OBART06G01950.1 104 IYS-SSNRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-55	7	145	IPR003441	NAC domain
PROSITE profile	PS51005	51.789	11	173	IPR003441	NAC domain
Pfam	PF02365	2.2E-28	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009809	Biological Process	lignin biosynthetic process
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0009901	Biological Process	anther dehiscence
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQERC 60 RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYSSSNR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD DPSSASASVS VNLPSYYSSS SSSSSPYCSA ADASGIADWD 180 TLDRLAASYE LNGALSDVAS GKNMAGFFDV VDQPAGAAAF SSGDGDLWSL ARSVSSSLHA 240 DLTTMNNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-47	8	164	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-47	8	164	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-47	8	164	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-47	8	164	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	8	165	17	174	NAC domain-containing protein 19
3swm_B	2e-47	8	165	17	174	NAC domain-containing protein 19
3swm_C	2e-47	8	165	17	174	NAC domain-containing protein 19
3swm_D	2e-47	8	165	17	174	NAC domain-containing protein 19
3swp_A	2e-47	8	165	17	174	NAC domain-containing protein 19
3swp_B	2e-47	8	165	17	174	NAC domain-containing protein 19
3swp_C	2e-47	8	165	17	174	NAC domain-containing protein 19
3swp_D	2e-47	8	165	17	174	NAC domain-containing protein 19
3ulx_A	1e-47	11	139	15	140	Stress-induced transcription factor NAC1
4dul_A	2e-47	8	164	14	170	NAC domain-containing protein 19
4dul_B	2e-47	8	164	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269\|PubMed:16214898, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00321	DAP	Transfer from AT2G46770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT833124	0.0	CT833124.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA241M20, full insert sequence.
GenBank	CT833125	0.0	CT833125.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245A08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015643041.1	1e-105	NAC domain-containing protein 43
Swissprot	Q84WP6	3e-93	NAC43_ARATH; NAC domain-containing protein 43
TrEMBL	A0A0D3GCE0	0.0	A0A0D3GCE0_9ORYZ; Uncharacterized protein
STRING	OBART06G01950.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1597	38	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46770.1	2e-80	NAC family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Gondolf VM, et al. A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis. BMC Plant Biol., 2014. 14: p. 344 [PMID:25492673] Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. GM Crops Food, 2014. 5(4): p. 302-20 [PMID:25523176] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]