PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART06G00300.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 326aa MW: 34641.4 Da PI: 6.1357

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART06G00300.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	176.2	2.4e-54	69	325	101	374
GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 a l+a+ +++r+H +Dfd++ G++Wp+L+q+La + ++pp+l++T+++sp+s++ el+ ++e+L+ fA+elg+pfef++lv + l++ OBART06G00300.1 69 AFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPASHHPLELQLIHENLSGFAAELGIPFEFTALVFDPLSSA 161 6799***************************5533.3578889****************************************99998 PP GRAS 190 el.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 ++ L+ p+Ea+aV+l + + ++ L++vk+l+P vvv+v++ +++++ l+ l+ ++al++sl+a ++ + OBART06G00300.1 162 SPpLGLSAAPDEAVAVHLTAGSGAFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRSCAALLESLDAA-GASPDVV 239 6515799999******998887........56789****************966.......5667899***988.5666999 PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +kvE+++l+++++ + g++ +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W++ +LvsvS+Wr OBART06G00300.1 240 SKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQRSELVSVSVWR 325 *********998888887......678889*******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	25.907	1	305	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-52	69	325	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSPSTSL GSCSSKPPED PPPPPIAADD 60 YCEDWDAVAF LDALGSARRL HLLDFDVGFG AHWPPLMQEL AHHWRRAAGP PPNLKVTALV 120 SPASHHPLEL QLIHENLSGF AAELGIPFEF TALVFDPLSS ASPPLGLSAA PDEAVAVHLT 180 AGSGAFSPAP AHLRVVKELR PAVVVCVDHG CERGALNLLR SCAALLESLD AAGASPDVVS 240 KVEQFVLRPR VERLAVGGGD KLPPPLQSML ASAGFAALQV SNAAEAQAEC LLRRTASHGF 300 HVEKRQAALA LWWQRSELVS VSVWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-19	69	325	100	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP001129	0.0	AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881861.1	1e-172	scarecrow-like protein 6
TrEMBL	A0A0D3GBU2	0.0	A0A0D3GBU2_9ORYZ; Uncharacterized protein
STRING	OBART06G00300.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP14537	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	5e-60	GRAS family protein