PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G27010.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 72aa    MW: 8371.42 Da    PI: 9.5781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G27010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07854346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W +   +l+ +a + + ++   +W+ Iar +g g++++++k ++ +
  OBART05G27010.1  8 QWPQKQNKLFEQALAVYDKEtpdRWHNIARAVGGGKSAEDVKRYYEM 54
                     68888899**********99************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-6558IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-10864IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-5862IPR009057Homeodomain-like
CDDcd001672.15E-4955No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MAQQARAQWP QKQNKLFEQA LAVYDKETPD RWHNIARAVG GGKSAEDVKR YYEMLEEDIK  60
HIESGKNRAR IA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-219661167RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078581e-106AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209881e-106AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415281e-106AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149611e-106AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-106CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363541e-106CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638815.19e-43protein RADIALIS-like 3
SwissprotQ1A1731e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0D3GB865e-46A0A0D3GB86_9ORYZ; Uncharacterized protein
STRINGOBART05G27010.18e-47(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-26RAD-like 6