PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G26180.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 236aa    MW: 25281 Da    PI: 5.6351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G26180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-162269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ lv++++  G g W+t ar  g++Rt+k+c++rw++yl
  OBART05G26180.1 22 KGPWTMEEDLSLVNYIAANGEGAWNTLARAAGLNRTGKSCRLRWLNYL 69
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.0881773IPR017930Myb domain
SuperFamilySSF466895.86E-2220103IPR009057Homeodomain-like
SMARTSM007173.5E-112171IPR001005SANT/Myb domain
PfamPF002494.2E-142269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-212387IPR009057Homeodomain-like
CDDcd001671.00E-82469No hitNo description
SMARTSM007171574109IPR001005SANT/Myb domain
PROSITE profilePS500904.36887107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.8E-788106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MQYTVEGSGG GGVQTVEAAV RKGPWTMEED LSLVNYIAAN GEGAWNTLAR AAGLNRTGKS  60
CRLRWLNYLR PDVRRGNITP EEHTLIIARY LPGRTDNEIK NFWRTKIQKK HRKSTDGIYA  120
TTTSESIMPA ATVHQNTVAE DQGSSSVSGR TTTATVAVTQ EYAIEAPTPS GMSSGSYLDQ  180
LQPGYASSIH GGQDGGAAAA AAGDVVVSDE FLAASSDNFW ALEDLWPTVQ SLHGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-17221107107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209860.0AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAC1209900.0AC120990.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0040E06, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639020.11e-150transcription factor MYB21
TrEMBLA0A0D3GAZ21e-174A0A0D3GAZ2_9ORYZ; Uncharacterized protein
STRINGOBART05G26180.11e-175(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-59myb domain protein 21