PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G25990.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 368aa    MW: 38479.7 Da    PI: 6.8908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G25990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.7e-33152209259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d  vv++tYeg+H+h+
  OBART05G25990.1 152 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 209
                      8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-35136211IPR003657WRKY domain
SuperFamilySSF1182902.88E-29143211IPR003657WRKY domain
PROSITE profilePS5081131.95146211IPR003657WRKY domain
SMARTSM007743.2E-39151210IPR003657WRKY domain
PfamPF031062.5E-26152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQESAPTTPP LDYEAFAGEF DDDVAPLEEV KRELVVDGVG LFPGGGASAA AAAAAVAGPM  60
TPNSMSVSST SSEACGVGGG AGGDEESAGK CKKEEEGDGG DDDGKEGSAT TKGDGDGEDK  120
NKKGVKGKGK GEKRPRQPRF AFMTKSEVDH LEDGYRWRKY GQKAVKNSPF PRSYYRCTTQ  180
KCPVKKRVER SYQDAAVVIT TYEGKHTHPI PATLRGTAHL LGAAAAAHHH GGLQYHHPGH  240
FAAAVGHRLP PQPHDTLGGG LLAPPHAQHL HAMQHQMQLA AAASGGSVHA AAMQQMPQPD  300
HAGLAAIIAS TTGASTTPAP PPATGSAAAA TTPLRMQHFM AQDYGLLQDM FIPSPFLHND  360
DANNNNHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26142212878Probable WRKY transcription factor 4
2lex_A2e-26142212878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637917.11e-168WRKY transcription factor 23
TrEMBLA0A0D3GAW30.0A0A0D3GAW3_9ORYZ; Uncharacterized protein
STRINGOBART05G25990.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-43WRKY DNA-binding protein 71