 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OBART05G22490.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
TCP |
| Protein Properties |
Length: 233aa MW: 24349.8 Da PI: 10.0292 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART05G22490.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 63.4 | 8.7e-20 | 51 | 94 | 3 | 46 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsk 46
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk
OBART05G22490.1 51 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSK 94
78*****************************************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 233 aa
Download sequence Send
to blast |
MISNNSTNEE LGGGGRKAAD QPSGGAAAVA SSRHWSASTE SRIVRVSRVF GGKDRHSKVR 60
TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKDGDKAA GGGGMKAFMS LSNSLGLLNA 120
ATMPATLAAH HHHHHHAAAY YAAAESWGNG GNGGHHHDVS HGVSPSAHNS PFPSLLSLAP 180
GSHHQFVFYS PEGGGFAVKE AAAEQFPVDS LDHSQGQLTL SSARSFLHSG SQG
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC130604 | 0.0 | AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence. |
| GenBank | AK069938 | 0.0 | AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence. |
| GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | GQ229484 | 0.0 | GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G60970.1 | 2e-27 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
