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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G20340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | WRKY | ||||||||
Protein Properties | Length: 196aa MW: 21401.5 Da PI: 3.9762 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.4 | 4e-25 | 2 | 62 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58 +D y WrKYGqKe+k+s++pr YYrC+++ gC+++k+v++s+ +dp+++++tY geH + OBART05G20340.1 2 HDSYLWRKYGQKEIKNSKHPRLYYRCSYRddhGCTATKQVQQSEdDDPSLFVVTYFGEHFC 62 7***************************99999********9872579***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 1.1E-37 | 1 | 64 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.623 | 1 | 60 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.1E-24 | 2 | 63 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-23 | 2 | 63 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 3 | 62 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MHDSYLWRKY GQKEIKNSKH PRLYYRCSYR DDHGCTATKQ VQQSEDDDPS LFVVTYFGEH 60 FCGRVADVGG PVVAGDDGEE SEELIVISFG SSAAVAAATG GASAAYPWPC CREDAKNSGA 120 SQPWSLPDCE EVPPLTANVA EELIEESTPE SELMGLISSP DLEYSLLDLE LGESSLGIDG 180 FINFDELSVY SIDNAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-19 | 1 | 62 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144737 | 6e-65 | AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence. | |||
GenBank | AP014961 | 6e-65 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 6e-65 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639266.1 | 1e-44 | probable WRKY transcription factor 38 | ||||
TrEMBL | A0A0D3G8Z8 | 1e-142 | A0A0D3G8Z8_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0DT30 | 1e-142 | A0A0E0DT30_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G20340.1 | 1e-143 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4663 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-19 | WRKY DNA-binding protein 46 |