PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G20320.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 290aa    MW: 32221.5 Da    PI: 6.4106
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G20320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY53.25.9e-17143204259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      +Dg++WrKYG K++ +sef + YYrC ++   +C++kk v++++ + p  + +t ++eH+++
  OBART05G20320.1 143 NDGFHWRKYGEKKILNSEFRKLYYRCGYSderKCQAKKYVQQENnKHPPEFRVTLTNEHTCN 204
                      7**************************998899*******98761578899********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-18136204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.9E-19137204IPR003657WRKY domain
SMARTSM007743.1E-26142205IPR003657WRKY domain
PROSITE profilePS5081112.771143206IPR003657WRKY domain
PfamPF031061.4E-19143203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MARRLPKSER SPSPPPPPPP GDQRDAAIQE LSKGSELATQ LMAQLELIPE RELDGRRDDA  60
LANVRSLSMS LSSSLYALRS ERREHHYCGS SSSSGGAGPA AVTSVSGGGR GGGSGARNKT  120
KRRRGKHGEE LTETVFITTT PENDGFHWRK YGEKKILNSE FRKLYYRCGY SDERKCQAKK  180
YVQQENNKHP PEFRVTLTNE HTCNTLFQDQ PSSSSTNSQV LDFTKASISS PLMDSHVGAP  240
ILKEEEEEEE EEVPSIDESS RIMSTIMRNY GAYGDYDESS PQSWNGAGWQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8364070.0CT836407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113F18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638351.11e-157probable WRKY transcription factor 63
TrEMBLA0A0D3G8Z60.0A0A0D3G8Z6_9ORYZ; Uncharacterized protein
TrEMBLI1PWM50.0I1PWM5_ORYGL; Uncharacterized protein
STRINGORGLA05G0177300.10.0(Oryza glaberrima)
STRINGOBART05G20320.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-15WRKY DNA-binding protein 55