PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G20030.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 537aa    MW: 56592.1 Da    PI: 6.7226
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G20030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.1e-32211268260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK++kgse+prsYY+Ct++gCp+kkkve+s  d++v+ei+Y+g H h+k
  OBART05G20030.1 211 DDGYNWRKYGQKQMKGSENPRSYYKCTFPGCPTKKKVEQSP-DGQVTEIVYKGAHSHPK 268
                      8****************************************.***************85 PP
2WRKY1062e-33356414159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  OBART05G20030.1 356 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHDLRAVITTYEGKHNHD 414
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.342205269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-28205269IPR003657WRKY domain
SuperFamilySSF1182901.7E-24206269IPR003657WRKY domain
SMARTSM007744.6E-35210268IPR003657WRKY domain
PfamPF031067.3E-25211267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-37341416IPR003657WRKY domain
SuperFamilySSF1182901.83E-29348416IPR003657WRKY domain
PROSITE profilePS5081138.687351416IPR003657WRKY domain
SMARTSM007741.2E-38356415IPR003657WRKY domain
PfamPF031068.9E-26357414IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MTAAPGSLPL VNSRPVALSL AASRSSFSSL LSGGAGSSLN LMTPPSSLPP SSPSSYFGGV  60
SSSGFLDSPI LLTPSLFPSP TTTGALFSWM TTAKATAATA PESQVQGGVK DEQQQYSDFT  120
FLPTASTAPA TTMAGATATT SNSFMQDSML MAPLGGDPYN GEQQQPWSYQ EPTMDADTRP  180
AEFTSSAAAG DLQPGGGAGG GRPQSQRRSS DDGYNWRKYG QKQMKGSENP RSYYKCTFPG  240
CPTKKKVEQS PDGQVTEIVY KGAHSHPKPR RRHHSFGGMS GTAATPENSS ASFGDDEIGV  300
GSPRAGNGGG DEFDDDEPDS KRWRKDGDGE GISMAGNRTV REPRVVVQTM SDIDILDDGY  360
RWRKYGQKVV KGNPNPRSYY KCTTAGCPVR KHVERASHDL RAVITTYEGK HNHDVPAARG  420
SAAAALYRAT PPPQASNAGM MPTTAQPSSY LQGGGGVLPA GGYGASYGGA PTTTQPANGG  480
GFAALSGRFD DDATGASYSY TSQQQQQPND AVYYASRAKD EPRDDGIMSF FEQPLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-36197417478Probable WRKY transcription factor 4
2lex_A4e-36197417478Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981840.0DQ298184.1 Oryza sativa (japonica cultivar-group) WRKY transcription factor 70 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637836.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-166WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0D3G8W70.0A0A0D3G8W7_9ORYZ; Uncharacterized protein
STRINGOBART05G20030.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.18e-80WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]