PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G18640.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 220aa    MW: 23716.6 Da    PI: 8.8163
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G18640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.8e-1557101347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky
  OBART05G18640.1  57 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 101
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.56850106IPR017930Myb domain
SuperFamilySSF466897.48E-1851106IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-1753104IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.2E-1254100IPR009057Homeodomain-like
SMARTSM007175.8E-1354104IPR001005SANT/Myb domain
CDDcd001675.09E-1257102No hitNo description
PfamPF002494.2E-1257101IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTHYDDLEND VCFIEAGLVP FPHYGAAGGG GGSGRSCYMV GGKRARGPDQ ERKKGVPWTE  60
EEHKLFLMGL KKYGRGDWRN ISRNFVTSRT PTQVASHAQK YFIRLNSGGK DKRRSSIHDI  120
TTVNLPDDDH GNPSPSPPPS VLTAHSSSSA AAVSEQFGML VDGKPPPPPL GRGAGHHHFM  180
PHPYAQVKIE AGNSHVAGGG RLDDSVLVQM QCGQLMQPLG
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0681380.0AK068138.1 Oryza sativa Japonica Group cDNA clone:J013135D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637475.11e-134transcription factor DIVARICATA
SwissprotQ8S9H75e-57DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D3G8D51e-162A0A0D3G8D5_9ORYZ; Uncharacterized protein
STRINGOBART05G18640.11e-163(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.13e-54Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]