PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G18270.4

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 477aa MW: 52874.3 Da PI: 5.5978

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G18270.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.7e-11	167	196	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OBART05G18270.4 167 AKTERRLAQNREAARKSRLRKKAYVQQLET 196 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	164	240	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	166	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.0E-7	167	197	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.8E-7	168	197	No hit	No description
CDD	cd14708	2.39E-20	168	220	No hit	No description
SuperFamily	SSF57959	1.29E-6	168	211	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.4E-29	249	323	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MNHCESSYCT ELQPAAAAYF GELEKALIHG TSAGAGVDHG MIQSDAYTES AGYLAARPPT 60 LEIFPSWPMS HLQEPYSNSQ SVGSTTDSSS AQNTMSQAEL VSPASMRSDS GQEQQQQEVL 120 MVTIDDYNYK QGLGAAIATA PSFQQHAGGL DMRKHGSTRK DGKLLDAKTE RRLAQNREAA 180 RKSRLRKKAY VQQLETSRIR LQQIEQELQR ARSQGLFPGG CSAPGDMSSG AVMFDMEYTR 240 WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF HLRAVLASSD VFHLMTGMWA 300 APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL QQSSEQTEEA LAQGLHQLHQ 360 SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ ADNLRQETLH HMRRILTTRQ 420 TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG TEFQVIQQSQ QNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MNHCESSYCT ELQPAAAAYF GELEKALIHG TSAGAGVDHG MIQSDAYTES AGYLAARPPT  60
LEIFPSWPMS HLQEPYSNSQ SVGSTTDSSS AQNTMSQAEL VSPASMRSDS GQEQQQQEVL  120
MVTIDDYNYK QGLGAAIATA PSFQQHAGGL DMRKHGSTRK DGKLLDAKTE RRLAQNREAA  180
RKSRLRKKAY VQQLETSRIR LQQIEQELQR ARSQGLFPGG CSAPGDMSSG AVMFDMEYTR  240
WIDDDSKCMA ELQGALQAQL PDGNLGAIVE ECMRHYDELF HLRAVLASSD VFHLMTGMWA  300
APAERCFLWM AGFRPSEILK MLIPQLDPLT EQQLMGMCSL QQSSEQTEEA LAQGLHQLHQ  360
SLADAVGGGP LNDGADVANY TGLMALALGR LENLESFYRQ ADNLRQETLH HMRRILTTRQ  420
TARCFLSIGE YNRRLRALSS LWASRPRENF IATENVSPTG TEFQVIQQSQ QNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881194.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D3G888	0.0	A0A0D3G888_9ORYZ; Uncharacterized protein
STRING	OMERI05G15000.1	0.0	(Oryza meridionalis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-138	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]