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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART05G18270.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
bZIP |
| Protein Properties |
Length: 540aa MW: 59744.2 Da PI: 8.5559 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART05G18270.2 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 33.7 | 7.8e-11 | 230 | 259 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
k err+++NReAAr+sR+RKka++++Le+
OBART05G18270.2 230 AKTERRLAQNREAARKSRLRKKAYVQQLET 259
699*************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 540 aa
Download sequence Send
to blast |
MGLRVAYWPR GLYLNASSPA TRIVSRSSRP SAAAATTEKG GKQHAKHPAA SASRRDRIHR 60
SPSLLHRRRR SAPSIARQAA AYFGELEKAL IHGTSAGAGV DHGMIQSDAY TESAGYLAAR 120
PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ 180
EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA GGLDMRKHGS TRKDGKLLDA KTERRLAQNR 240
EAARKSRLRK KAYVQQLETS RIRLQQIEQE LQRARSQGLF PGGCSAPGDM SSGAVMFDME 300
YTRWIDDDSK CMAELQGALQ AQLPDGNLGA IVEECMRHYD ELFHLRAVLA SSDVFHLMTG 360
MWAAPAERCF LWMAGFRPSE ILKMLIPQLD PLTEQQLMGM CSLQQSSEQT EEALAQGLHQ 420
LHQSLADAVG GGPLNDGADV ANYTGLMALA LGRLENLESF YRQADNLRQE TLHHMRRILT 480
TRQTARCFLS IGEYNRRLRA LSSLWASRPR ENFIATENVS PTGTEFQVIQ QSQQNQFSGF
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK109520 | 0.0 | AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5.
Mol. Genet. Genomics, 2005. 274(4): p. 337-45
[PMID:16261349] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
BMC Genomics, 2014. 15: p. 461
[PMID:24919709]
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