PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART05G18270.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 540aa MW: 59744.2 Da PI: 8.5559

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G18270.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.7	7.8e-11	230	259	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ OBART05G18270.2 230 AKTERRLAQNREAARKSRLRKKAYVQQLET 259 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-6	227	303	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	229	273	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	230	260	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-6	231	274	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.6E-7	231	260	No hit	No description
PROSITE pattern	PS00036	0	234	249	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.3E-29	312	386	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MGLRVAYWPR GLYLNASSPA TRIVSRSSRP SAAAATTEKG GKQHAKHPAA SASRRDRIHR 60 SPSLLHRRRR SAPSIARQAA AYFGELEKAL IHGTSAGAGV DHGMIQSDAY TESAGYLAAR 120 PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ 180 EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA GGLDMRKHGS TRKDGKLLDA KTERRLAQNR 240 EAARKSRLRK KAYVQQLETS RIRLQQIEQE LQRARSQGLF PGGCSAPGDM SSGAVMFDME 300 YTRWIDDDSK CMAELQGALQ AQLPDGNLGA IVEECMRHYD ELFHLRAVLA SSDVFHLMTG 360 MWAAPAERCF LWMAGFRPSE ILKMLIPQLD PLTEQQLMGM CSLQQSSEQT EEALAQGLHQ 420 LHQSLADAVG GGPLNDGADV ANYTGLMALA LGRLENLESF YRQADNLRQE TLHHMRRILT 480 TRQTARCFLS IGEYNRRLRA LSSLWASRPR ENFIATENVS PTGTEFQVIQ QSQQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MGLRVAYWPR GLYLNASSPA TRIVSRSSRP SAAAATTEKG GKQHAKHPAA SASRRDRIHR  60
SPSLLHRRRR SAPSIARQAA AYFGELEKAL IHGTSAGAGV DHGMIQSDAY TESAGYLAAR  120
PPTLEIFPSW PMSHLQEPYS NSQSVGSTTD SSSAQNTMSQ AELVSPASMR SDSGQEQQQQ  180
EVLMVTIDDY NYKQGLGAAI ATAPSFQQHA GGLDMRKHGS TRKDGKLLDA KTERRLAQNR  240
EAARKSRLRK KAYVQQLETS RIRLQQIEQE LQRARSQGLF PGGCSAPGDM SSGAVMFDME  300
YTRWIDDDSK CMAELQGALQ AQLPDGNLGA IVEECMRHYD ELFHLRAVLA SSDVFHLMTG  360
MWAAPAERCF LWMAGFRPSE ILKMLIPQLD PLTEQQLMGM CSLQQSSEQT EEALAQGLHQ  420
LHQSLADAVG GGPLNDGADV ANYTGLMALA LGRLENLESF YRQADNLRQE TLHHMRRILT  480
TRQTARCFLS IGEYNRRLRA LSSLWASRPR ENFIATENVS PTGTEFQVIQ QSQQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015639063.2	0.0	transcription factor TGAL5 isoform X7
Refseq	XP_025881194.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D3G886	0.0	A0A0D3G886_9ORYZ; Uncharacterized protein
STRING	OBART05G18270.2	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-136	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]