PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G15500.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 368aa    MW: 40301.1 Da    PI: 8.4704
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G15500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like45.91.2e-14182224144
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle 44 
                      k+r rW +eLHerFv++v qL G +kAtP +il l++ ++Lt++
  OBART05G15500.1 182 KKRFRWPKELHERFVSVVLQL-GVDKATPNQILPLLNREDLTRD 224
                      68*******************.********************97 PP
2Response_reg42.73.1e-156715328109
                      EESSHHHHHHHHHHHH.....ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
     Response_reg  28 eaddgeealellkekd.....pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                      ++   ++a + ++e++     +D++l+ +  p  +dG++ll+   + +++lp++v++a +++ ++l++++ Ga d+l+Kp   eel +
  OBART05G15500.1  67 AVMPKTAARDAVEELHenpwsYDMVLTEVHAPAgIDGFNLLQYAGT-DMDLPVVVFSADDDKRTVLKCVNSGACDYLVKPLRHEELKN 153
                      55555555555555555559************99********9755.559**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.1E-2924167No hitNo description
SuperFamilySSF521723.98E-2124166IPR011006CheY-like superfamily
SMARTSM004482.5E-825155IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.13626159IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.12E-1328158No hitNo description
PfamPF000721.4E-1072153IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466892.51E-6182225IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-10182225IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.0E-13182225IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAGSCSVAGS NKSKLADEEF SPVGMRVLLI DESTTYLKII TKLLLNCGYK GLTVTNFEIT  60
YVWRVDAVMP KTAARDAVEE LHENPWSYDM VLTEVHAPAG IDGFNLLQYA GTDMDLPVVV  120
FSADDDKRTV LKCVNSGACD YLVKPLRHEE LKNIWQHVYR RKLRSGGRRA AAAGNSSKGE  180
IKKRFRWPKE LHERFVSVVL QLGVDKATPN QILPLLNRED LTRDQRFRIA LTKSKALPSC  240
STIPIGETVH GIPLALQAIG TGNNQHLIVP FNRITFVRPR GVEIGQNGVV GGLVTGNNNV  300
VVPTATSIIA RAFGREIVNG ADLFDHGTLI RDSSSTSHDG AQNELGETNL AFELMAKKGS  360
DVEPRIGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1324830.0AC132483.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0014C03, complete sequence.
GenBankAC1349320.0AC134932.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0092G21, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881540.11e-149two-component response regulator ARR11-like
TrEMBLA0A0D3G7B60.0A0A0D3G7B6_9ORYZ; Uncharacterized protein
STRINGOBART05G15500.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1706467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-35response regulator 10