 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OBART05G15060.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
AP2 |
| Protein Properties |
Length: 328aa MW: 36830.3 Da PI: 6.8841 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART05G15060.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 41.1 | 4.5e-13 | 11 | 67 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g
OBART05G15060.1 11 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 67
57*******************6666777775555599******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 328 aa
Download sequence Send
to blast |
MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD EEAAARAYDL 60
AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR QLHNSRWDAS LGHLLGNDYM 120
SLGKDITLDG KFAGTFGLER KIDLTNYIRW WLPKKTRQSD TSKMEEVTDE IRAIESSMQR 180
TEPYKFPSLG LHSNSKPSSV VLSACDILSQ SDAFKSFSEK STKLSEECTF SKEMDEGKTV 240
TPVPATGHDT TAVNMNVNGL LVQRAPYTLP SVTAQMKNTW NPADPSADPL FWTNFILPAS 300
QPVTMATIAT TTFAKNEVSS SDPFHGQE
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AB897877 | 0.0 | AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds. |
| GenBank | AK059324 | 0.0 | AK059324.1 Oryza sativa Japonica Group cDNA clone:001-025-H11, full insert sequence. |
| GenBank | EU334857 | 0.0 | EU334857.1 Oryza sativa Indica Group AP2/EREBP-like protein (AP2LP) mRNA, complete cds. |
