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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G14470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 252aa MW: 25273.4 Da PI: 6.341 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 59.3 | 8.1e-19 | 65 | 171 | 192 | 274 |
GRAS 192 eeLrvkpgEalaVnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 ++L v pg laV lq+hrll +++++ + d++L+++++l+Pk+vv++e+eadhn +++ +r+ +al OBART05G14470.1 65 SRLVVIPGQPLAVVANLQIHRLLafpdyvdgvasrrpaaeqsgssqhTMTTATKTKADALLRAIRDLNPKLVVLTENEADHNVAELGARVWNAL 158 5688899999*********************************99764455555589************************************* PP GRAS 262 eyysalfdsleak 274 +yy+alfd+lea+ OBART05G14470.1 159 NYYAALFDALEAS 171 **********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.8E-16 | 65 | 171 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVPVPVASMA TATAPAAVAA ADNGGHGSSS ASQNASGSGQ GQGGNVVGRM SIEELSATAT 60 GSIGSRLVVI PGQPLAVVAN LQIHRLLAFP DYVDGVASRR PAAEQSGSSQ HTMTTATKTK 120 ADALLRAIRD LNPKLVVLTE NEADHNVAEL GARVWNALNY YAALFDALEA SSTPPAAVPP 180 PGAAHGGGCF PVICWCDVPV FSVSTWTARR VLVPAPPLWP PAAAGGAGPS GSGYGGDGPS 240 TASSSAAMWW VG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120987 | 0.0 | AC120987.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0007A06, complete sequence. | |||
GenBank | AC136218 | 0.0 | AC136218.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0039A21, complete sequence. | |||
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881539.1 | 3e-73 | scarecrow-like protein 3 | ||||
TrEMBL | A0A0D3G6Z8 | 1e-178 | A0A0D3G6Z8_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G14470.1 | 1e-179 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17063 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 2e-08 | GRAS family protein |