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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART05G06600.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
MIKC_MADS |
Protein Properties |
Length: 274aa MW: 30852.7 Da PI: 9.4949 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART05G06600.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 98.4 | 2.9e-31 | 51 | 101 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyeys+
OBART05G06600.1 51 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSN 101
79***********************************************95 PP
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2 | K-box | 75.6 | 1.4e-25 | 119 | 204 | 4 | 89 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89
s+ + ++e +a+++qqe+akLk++i nLq+++R l+G+++++++++eL+qLe +L+k+l kiR++K+ l + +l+ k e ++
OBART05G06600.1 119 SNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKETELQNDNMYLKSKVAESER 204
34444999************************************************************************988765 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 32.422 | 43 | 103 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.1E-39 | 43 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 45 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.03E-33 | 45 | 116 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.49E-44 | 45 | 117 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 45 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 52 | 99 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 65 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-32 | 80 | 101 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 4.6E-18 | 128 | 204 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.011 | 129 | 226 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MHIYKEQEAE PSTGLMMPEP APVASPGSGG SGGSGSVGAE KIGSRGKIEI KRIENTTNRQ 60 VTFCKRRNGL LKKAYELSVL CDAEVALVVF SSRGRLYEYS NNSVKETIER YKKANSDTSN 120 ASTVAEINAQ HYQQEAAKLK QQITNLQNSN RTLVGDNITT MNHRELKQLE GRLDKGLGKI 180 RARKETELQN DNMYLKSKVA ESERGLQTVN MMGSASTSEY VQNMIHYDPR NFLQFNIMHQ 240 PQYYPEQEDR KAFMSGKKYS QCNIVRVHSS TNEI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1egw_A | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_B | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_C | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
1egw_D | 2e-19 | 45 | 115 | 2 | 72 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
3kov_A | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3kov_B | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3kov_I | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3kov_J | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3p57_A | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3p57_B | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3p57_C | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3p57_D | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3p57_I | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
3p57_J | 3e-19 | 45 | 115 | 2 | 72 | Myocyte-specific enhancer factor 2A |
5f28_A | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
5f28_B | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
5f28_C | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
5f28_D | 4e-19 | 45 | 130 | 3 | 91 | MEF2C |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB232157 | 0.0 | AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds. |
GenBank | AK111723 | 0.0 | AK111723.1 Oryza sativa Japonica Group cDNA clone:J023027E19, full insert sequence. |
GenBank | FJ750942 | 0.0 | FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds. |
Publications
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- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate. Plant Cell, 2011. 23(7): p. 2536-52 [PMID:21784949] - Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58. Plant Sci., 2012. 183: p. 183-9 [PMID:22195592] - Yun D, et al.
OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice. Mol Plant, 2013. 6(3): p. 743-56 [PMID:23300256] - Yan D, et al.
Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development. Plant J., 2015. 82(1): p. 12-24 [PMID:25647350] - Zheng M, et al.
DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa). New Phytol., 2015. 206(4): p. 1476-90 [PMID:25675970] - Chen R, et al.
A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58. Mol Plant, 2015. 8(7): p. 1069-89 [PMID:25684654] - Hu Y, et al.
Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development. Mol Plant, 2015. 8(9): p. 1366-84 [PMID:25917758]
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