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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
OBART05G06590.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 243aa MW: 27554.9 Da PI: 4.9029 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART05G06590.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 74.8 | 6.9e-24 | 36 | 83 | 3 | 50 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
ie++ rqvtf+kR ng+lKKA+ELS L daeva+i+fss+g+lyey
OBART05G06590.1 36 IEDTADRQVTFCKRCNGLLKKAYELSMLYDAEVALIVFSSRGRLYEYN 83
99*********************************************6 PP
|
| 2 | K-box | 48.4 | 4.1e-17 | 101 | 195 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLsl.keLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96
s+ + ++e +a+++qqe+akLk+ i Lq+++R ++ +L+ L++ +L ++ +L +l+kiR++Knell+++ie++q++e elq++n++ ++
OBART05G06590.1 101 SNASTVAEINAQHYQQEAAKLKQHITYLQNSNRFII--SLSCLDFfFQLDKVV-HLVIGLEKIRARKNELLCAEIEYMQRRETELQNDNMYSKS 191
44444999**********************977765..788777524666664.5889********************************9999 PP
K-box 97 klee 100
+++e
OBART05G06590.1 192 EVAE 195
8875 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MHIYKEQEAE PSTGLMMPEP APAASPGSGS SDGSGIEDTA DRQVTFCKRC NGLLKKAYEL 60
SMLYDAEVAL IVFSSRGRLY EYNNSVEETI ERYKKANSDT SNASTVAEIN AQHYQQEAAK 120
LKQHITYLQN SNRFIISLSC LDFFFQLDKV VHLVIGLEKI RARKNELLCA EIEYMQRRET 180
ELQNDNMYSK SEVAESERGL QTVNMIGSAS TSEYVQNMIH YDPRNFQQFN IMQQLASESL 240
GTL
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB232157 | 1e-115 | AB232157.1 Oryza sativa Japonica Group mRNA for transcription factor OsMADS58, complete cds. |
| GenBank | AK111723 | 1e-115 | AK111723.1 Oryza sativa Japonica Group cDNA clone:J023027E19, full insert sequence. |
| GenBank | FJ750942 | 1e-115 | FJ750942.1 Oryza sativa clone KCS268A08 MADS-box transcription factor 58 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5.
Mol. Genet. Genomics, 2005. 274(4): p. 337-45
[PMID:16261349] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Sato H,Yoshida K,Mitsuda N,Ohme-Takagi M,Takamizo T
Male-sterile and cleistogamous phenotypes in tall fescue induced by chimeric repressors of SUPERWOMAN1 and OsMADS58.
Plant Sci., 2012. 183: p. 183-9
[PMID:22195592] - Yun D, et al.
OsMADS16 genetically interacts with OsMADS3 and OsMADS58 in specifying floral patterning in rice.
Mol Plant, 2013. 6(3): p. 743-56
[PMID:23300256] - Yan D, et al.
Curved chimeric palea 1 encoding an EMF1-like protein maintains epigenetic repression of OsMADS58 in rice palea development.
Plant J., 2015. 82(1): p. 12-24
[PMID:25647350] - Zheng M, et al.
DEFORMED FLORAL ORGAN1 (DFO1) regulates floral organ identity by epigenetically repressing the expression of OsMADS58 in rice (Oryza sativa).
New Phytol., 2015. 206(4): p. 1476-90
[PMID:25675970] - Chen R, et al.
A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
Mol Plant, 2015. 8(7): p. 1069-89
[PMID:25684654] - Hu Y, et al.
Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
Mol Plant, 2015. 8(9): p. 1366-84
[PMID:25917758]
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