PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 199aa MW: 21801.1 Da PI: 5.7461

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART05G05560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.5	3.6e-30	100	158	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+++gC+vkk+ver++ed ++v++tY g Hnh OBART05G05560.1 100 LDDGFKWRKYGKKAVKNSPNPRNYYRCSTEGCNVKKRVERDREDHRYVITTYDGVHNHA 158 59********************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-32	88	160	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-27	92	160	IPR003657	WRKY domain
PROSITE profile	PS50811	31.422	95	160	IPR003657	WRKY domain
SMART	SM00774	2.5E-34	100	159	IPR003657	WRKY domain
Pfam	PF03106	3.0E-23	101	157	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MAASVGLNPE AFFFSNSYSY SSSPFMASYT PELSAAAIDA DLFSGELDFD CSLPAPTFAG 60 AGQEYPENEN TMMRYESEEK MRARVNGRIG FRTRSEVEIL DDGFKWRKYG KKAVKNSPNP 120 RNYYRCSTEG CNVKKRVERD REDHRYVITT YDGVHNHASP AAAAAALQYA AAAGDYYSPP 180 LSSAGSPPAA YSAGGSLLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-26	86	161	3	78	Probable WRKY transcription factor 4
2lex_A	1e-26	86	161	3	78	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00531	DAP	Transfer from AT5G26170	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT832802	0.0	CT832802.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033C24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638018.1	1e-112	probable WRKY transcription factor 50
TrEMBL	A0A0D3G3Z6	1e-144	A0A0D3G3Z6_9ORYZ; Uncharacterized protein
TrEMBL	I1PT02	1e-144	I1PT02_ORYGL; Uncharacterized protein
STRING	ORGLA05G0050000.1	1e-145	(Oryza glaberrima)
STRING	OBART05G05560.1	1e-145	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP441	37	206

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-39	WRKY DNA-binding protein 50