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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OBART05G04060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | bHLH | ||||||||
| Protein Properties | Length: 121aa MW: 13089.2 Da PI: 11.2057 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 11.3 | 0.00063 | 49 | 103 | 4 | 55 |
HHHHHHHHHHHH...HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdr...iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+++e+ rrR++r ++ ++e Lr+l+P +++++ e L +A +YI Lq
OBART05G04060.1 49 SNKEMRRRRMRRcveVRRKMEALRRLVPGgG-GGGGEDAGGEELLFRAADYIARLQ 103
56777777777555589************44.5555559999999*******9998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 2.91E-6 | 56 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 6.7E-4 | 59 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 121 aa Download sequence Send to blast |
MVAHATINNG RCDAAAAAAA AAKLRPAMTV MPPATARSNH RAACKNSGSN KEMRRRRMRR 60 CVEVRRKMEA LRRLVPGGGG GGGEDAGGEE LLFRAADYIA RLQVQVKVMQ LMVDVLEQTK 120 D |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015637969.1 | 7e-46 | transcription factor IBH1 | ||||
| TrEMBL | A0A0D3G3H0 | 3e-81 | A0A0D3G3H0_9ORYZ; Uncharacterized protein | ||||
| STRING | OBART05G04060.1 | 5e-82 | (Oryza barthii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP9111 | 21 | 26 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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