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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G01640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | LBD | ||||||||
Protein Properties | Length: 87aa MW: 9158.62 Da PI: 9.1023 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 69 | 1e-21 | 36 | 84 | 1 | 49 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr+C++ Cvlapyfp ++p+kf +h++FGasn++kll+a OBART05G01640.1 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQAS 84 7*********************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.115 | 35 | 87 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-21 | 36 | 83 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TVVLSPCAAC KILRRRCVDR CVLAPYFPPT 60 EPHKFTTAHR VFGASNIIKL LQASSYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-19 | 35 | 82 | 10 | 57 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-19 | 35 | 82 | 10 | 57 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 1e-133 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638880.1 | 6e-39 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 7e-28 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A0D3G2Q0 | 8e-55 | A0A0D3G2Q0_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G01640.1 | 1e-55 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 7e-30 | LOB domain-containing protein 1 |