PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G01640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 87aa    MW: 9158.62 Da    PI: 9.1023
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G01640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260691e-213684149
           DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49
                     +CaaCk+lrr+C++ Cvlapyfp ++p+kf  +h++FGasn++kll+a 
  OBART05G01640.1 36 PCAACKILRRRCVDRCVLAPYFPPTEPHKFTTAHRVFGASNIIKLLQAS 84
                     7*********************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.1153587IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-213683IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MGSSSDTACT VATAPPSPTP TSPPPQLAAT TVVLSPCAAC KILRRRCVDR CVLAPYFPPT  60
EPHKFTTAHR VFGASNIIKL LQASSYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-1935821057LOB family transfactor Ramosa2.1
5ly0_B9e-1935821057LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126131e-133CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638880.16e-39LOB domain-containing protein 1
SwissprotQ9SK087e-28LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A0D3G2Q08e-55A0A0D3G2Q0_9ORYZ; Uncharacterized protein
STRINGOBART05G01640.11e-55(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-30LOB domain-containing protein 1