PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART05G01510.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 441aa    MW: 49853.9 Da    PI: 8.6086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART05G01510.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-0680102123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cg sF+ + +L++H+++H
  OBART05G01510.2  80 HDCKVCGASFKKPAHLRQHMQSH 102
                      56*******************99 PP
2zf-C2H219.42.8e-06169193123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ++C+   C+ s+srk++L+rH+ tH
  OBART05G01510.2 169 FSCHvdGCPFSYSRKDHLNRHLLTH 193
                      89*********************99 PP
3zf-C2H2110.0013198223123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      + Cp   C++ F+ k n +rH +  H
  OBART05G01510.2 198 FACPmeGCNRKFTIKGNIQRHVQEmH 223
                      78*******************98877 PP
4zf-C2H220.51.2e-06235259123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      + Cp  +Cgk+F+  s L++H  +H
  OBART05G01510.2 235 FICPeeNCGKTFKYASKLQKHEESH 259
                      78*******************9988 PP
5zf-C2H216.72.1e-05326350223
                      EET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                      +C+  dC+ sFs ksnL +H +  H
  OBART05G01510.2 326 RCHlkDCKLSFSKKSNLDKHVKAvH 350
                      7*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355153355IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.84E-676111No hitNo description
Gene3DG3DSA:3.30.160.608.0E-680111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.54980107IPR007087Zinc finger, C2H2
SMARTSM003550.001680102IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-6166195No hitNo description
Gene3DG3DSA:3.30.160.603.3E-9166195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0016169193IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349169198IPR007087Zinc finger, C2H2
PROSITE patternPS000280171193IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-6196224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-5196224No hitNo description
SMARTSM003550.0019198223IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866198228IPR007087Zinc finger, C2H2
PROSITE patternPS000280200223IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-7231259IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.57E-5232261No hitNo description
SMARTSM003550.0018235259IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24235259IPR007087Zinc finger, C2H2
PROSITE patternPS000280237259IPR007087Zinc finger, C2H2
SMARTSM003557.8267292IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280269292IPR007087Zinc finger, C2H2
SMARTSM0035513295316IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.15E-7306367No hitNo description
SMARTSM003550.031325350IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967325355IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-5326351IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280327350IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-6352378IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974356387IPR007087Zinc finger, C2H2
SMARTSM003553.5356382IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280358382IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MGSVELGAEE REVAGGEGGS KGAAPPARDI RRYKCDFCSV VRSKKGLIRA HVLEHHKDEV  60
DDLDDYLGRG GGETRKEMDH DCKVCGASFK KPAHLRQHMQ SHSLERTPKC EKALSGLVPG  120
WGDPSGKLLQ ECLFHALLQA LNGLVSGWGD SPEKLHQECL VHTLFQRPFS CHVDGCPFSY  180
SRKDHLNRHL LTHQGKLFAC PMEGCNRKFT IKGNIQRHVQ EMHKDGSPCE SKKEFICPEE  240
NCGKTFKYAS KLQKHEESHV KLDYSEVICC EPGCMKAFTN LECLKAHNKS CHRHVVCDVC  300
GTKQLKKNFK RHQRMHEGSC VTERVRCHLK DCKLSFSKKS NLDKHVKAVH EQKRPFVCGF  360
SGCGKSFSYK HVRDNHEKSS AHVYVQANFE EIDRERPRQA GGRKRKAIPV ESLMRKRVAA  420
PDDDAPACDD GTEYLRWLLS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-1316628940157PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-1316628940157PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016310.0AK101631.1 Oryza sativa Japonica Group cDNA clone:J033054O17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637660.10.0transcription factor IIIA isoform X1
TrEMBLA0A0D3G2N50.0A0A0D3G2N5_9ORYZ; Uncharacterized protein
STRINGOBART05G01510.10.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-90transcription factor IIIA