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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART05G00760.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRAS | ||||||||
Protein Properties | Length: 1386aa MW: 157716 Da PI: 8.0907 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 351.1 | 1.7e-107 | 355 | 720 | 1 | 366 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d a++l++++++++spdgd++qRla+y++ +L+arla+ +s++y++l +s+ts ++ l+a++l+ ++P+ + s OBART05G00760.1 355 LRNLLIHCAQAVAADDRISASELVKKIRQHSSPDGDSNQRLAFYLVDGLEARLAGIGSQVYRKLMASRTS---AESLLKAYSLYLSACPFERAS 445 689*************************************************************999998...89999**************** PP GRAS 95 hltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 + aNq+Il+a +g+ ++vHi+ f+i G+QWp+L+q La+ ++gpp+lRiTg++ p++g e +eetg+rLa++A+ ++vpf+++ +a+ OBART05G00760.1 446 FAYANQTILDASKGQqpRKVHIVHFGICTGFQWPSLIQRLANEEGGPPKLRITGIDMPQPGfhPCEIIEETGKRLADYANLFKVPFQYQG-IAS 538 ***************999******************************************9999999***********************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 r+e++++e+L+++++E+l+Vn+++++++l de vs++s+rd+vLk+++ ++P+v+++ + +++s+ F +rf e l +ys+lfd+++a++pr+ OBART05G00760.1 539 RWETVQIEDLNIDKDEVLIVNCMFRMKNLGDEMVSMNSARDRVLKIMRMMNPRVFILGIVNGSYSSPFFITRFKEVLFHYSSLFDMIDANVPRD 632 ********************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +e+r+++Er l+g+e+ n++acegaer+er e++++W++r +aGFk++p++ + k++ + + ++ + + +e+ g+l++gWk+r+ OBART05G00760.1 633 NEARKMIERGLFGQEALNIIACEGAERTERPESYKQWQARCLKAGFKQLPVDPATLKEIINMKKGIYHEDFVADEDGGWLLQGWKGRK 720 *******************************************************************999***************996 PP | |||||||
2 | GRAS | 367.1 | 2.4e-112 | 1016 | 1383 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lL++cA+a++s+++ a++lL +++++a pdgd qRla +f+ +L+arla+++s++y++l +++ts + + l+a++l++ ++P+ +++ OBART05G00760.1 1016 LLIQCAQAIASNNHPFASELLRKIRHHALPDGDGSQRLANCFADGLEARLAGTGSQMYEKLMAKQTS---TRDMLKAYHLYFVACPFEMVTY 1104 8****************************************************************99...899******************* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 N++I +a+eg++++Hi+Df+i G+QWp+L+q La+R++gpp+lRiTgv+ p++g +e++eetg+rLa++A+ ++vpf+++ +a+r OBART05G00760.1 1105 YFSNKTIIDALEGKTTLHIVDFGILFGFQWPCLIQRLAKREGGPPKLRITGVDVPQPGfrPHERIEETGKRLAEYANMFNVPFQYHG-IASR 1195 *********************************************************9*****************************.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 +e++ +e+L+++++E+l++n++ ++ +l de+ +++s+rd+vL+++k+++P+v+++ + ++s+ Fl+rf e l +ys+lfd+l++++pr OBART05G00760.1 1196 WETICIEDLSIDKDEVLIINCMSRMRKLGDETENIDSARDRVLHMMKRMNPQVFILGVVNGLYSSPFFLTRFREVLFHYSSLFDMLDNNVPR 1287 ******************************************************************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 ++e+ri vE+ l+g+++ n+vacegaer+er e++++W++r+ +aGFk+ p+++ + + + + +++d + ++e+sg+l++gWk+r + + OBART05G00760.1 1288 NHEARILVEKDLFGNDALNAVACEGAERIERPESYKQWQMRILRAGFKQRPVNQAILNRSVHYKELYHED-FVIDEDSGWLLQGWKGRIIQA 1378 ******************************************************9999999999999955.********************* PP GRAS 370 vSaWr 374 +S W+ OBART05G00760.1 1379 LSTWK 1383 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.146 | 329 | 708 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-105 | 355 | 720 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 65 | 987 | 1364 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.5E-110 | 1016 | 1383 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 1386 aa Download sequence Send to blast |
MAHAPLPSLL CLKEPIYDVV AELELLISKQ LSLYNYSPSD PQLFSQPTTG SRTYLSGAVT 60 IPGICNDKSN LGQQQFQIDA ALSLEYQRIR SSDALCYISR VLMEDVDERV DLHQGEAALQ 120 AAEKPFYDIL GQVYPPSLNR LALHSANEPD TPDESSSRNN YHNRYNSSHS SFNMLQPLPT 180 PLSPYSYGRS LFLPNQHLVS TAWTSTFGIP GFQIRRGAEE AKRFVPIIDK LVIDLDTDRG 240 LSISKMTTKA KVGDKKRYAI FELTDQRHSP YTTDLDILEG RNSKRYAITY CEIIRNDMFD 300 RVLLCYGVEN FAEASNLRKI MTKQARKNSL NGQTRGSAQR KLRGMKQLKK DVVDLRNLLI 360 HCAQAVAADD RISASELVKK IRQHSSPDGD SNQRLAFYLV DGLEARLAGI GSQVYRKLMA 420 SRTSAESLLK AYSLYLSACP FERASFAYAN QTILDASKGQ QPRKVHIVHF GICTGFQWPS 480 LIQRLANEEG GPPKLRITGI DMPQPGFHPC EIIEETGKRL ADYANLFKVP FQYQGIASRW 540 ETVQIEDLNI DKDEVLIVNC MFRMKNLGDE MVSMNSARDR VLKIMRMMNP RVFILGIVNG 600 SYSSPFFITR FKEVLFHYSS LFDMIDANVP RDNEARKMIE RGLFGQEALN IIACEGAERT 660 ERPESYKQWQ ARCLKAGFKQ LPVDPATLKE IINMKKGIYH EDFVADEDGG WLLQGWKGRK 720 SVKKKVTRNN PNINQPDVNK KITNFCFRSL KQCRSSIMDS PEYCQTNSNI TLDYINRILM 780 EEDIDEKISI KKGQDALQAT EKPFYDILGK AYPSSSKETA INGDSQADYP DNGSSSYHEQ 840 ACSGSFVSDL LGSQDAHSIT TDWSSEFDRL ALQFRRGVEE AKRFIPNIEK LVDDPEKNGL 900 YACKQTTETT EQKGKHENKI RNHPHDPHVE HIELMEARNS KHMAISTSET IRDEMFDSIL 960 LCNRQLPGEV ANLRGMMAKE ASDNPKKFQS KGYGKGQRKP HSSKKKQKEA IDLSVLLIQC 1020 AQAIASNNHP FASELLRKIR HHALPDGDGS QRLANCFADG LEARLAGTGS QMYEKLMAKQ 1080 TSTRDMLKAY HLYFVACPFE MVTYYFSNKT IIDALEGKTT LHIVDFGILF GFQWPCLIQR 1140 LAKREGGPPK LRITGVDVPQ PGFRPHERIE ETGKRLAEYA NMFNVPFQYH GIASRWETIC 1200 IEDLSIDKDE VLIINCMSRM RKLGDETENI DSARDRVLHM MKRMNPQVFI LGVVNGLYSS 1260 PFFLTRFREV LFHYSSLFDM LDNNVPRNHE ARILVEKDLF GNDALNAVAC EGAERIERPE 1320 SYKQWQMRIL RAGFKQRPVN QAILNRSVHY KELYHEDFVI DEDSGWLLQG WKGRIIQALS 1380 TWKVET |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-48 | 359 | 1383 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025881341.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A0D3G2F5 | 0.0 | A0A0D3G2F5_9ORYZ; Uncharacterized protein | ||||
STRING | OBART05G00760.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-163 | GRAS family protein |