PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 318aa MW: 32327.6 Da PI: 5.4071

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G29570.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.5	5.6e-07	31	79	2	45
SSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45 g WT e ++ + +a + G + W++ a+ + g+t+ +++ ++ OBART04G29570.1 31 GGWTREQEKAFENALATVGDDeeegdgLWEKLAEAVE-GKTADEVRRHYE 79 56***************99************.********95 PP
2	Myb_DNA-binding	39.7	1.1e-12	145	189	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky OBART04G29570.1 145 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 189 6***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.851	28	86	IPR017884	SANT domain
SMART	SM00717	2.6E-5	29	84	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-5	31	79	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.24E-9	32	88	IPR009057	Homeodomain-like
CDD	cd00167	9.54E-6	33	82	No hit	No description
PROSITE profile	PS51294	16.605	138	194	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-16	140	195	IPR009057	Homeodomain-like
SMART	SM00717	9.3E-11	142	192	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	3.0E-17	142	192	IPR006447	Myb domain, plants
CDD	cd00167	3.76E-10	145	190	No hit	No description
Pfam	PF00249	3.7E-11	145	189	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-10	145	188	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MAVEEASSSS GGGRGGGGGG GGEEGLSGCG GGWTREQEKA FENALATVGD DEEEGDGLWE 60 KLAEAVEGKT ADEVRRHYEL LVEDVDGIEA GRVPLLVYAG DGGVEEGSAG GGKKGGGGGG 120 GGGGGGHGEK GSAKSAEQER RKGIAWTEDE HRLFLLGLEK YGKGDWRSIS RNFVISRTPT 180 QVASHAQKYF IRLNSMNRER RRSSIHDITS VNNGDTSAAQ GPITGQPNGP SANPGKSSKQ 240 SPQPANAPPG VDAYGTTIGQ PVGGPLVSAV GTPVTLPVPA APHIAYGMHA PVPGAVVPGA 300 PVNMPPMPYP MPPPTSHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	9e-14	28	103	6	78	RADIALIS
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	118	GGKKGGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00500	DAP	Transfer from AT5G08520	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068623	0.0	AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.
GenBank	AK106166	0.0	AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636999.1	0.0	transcription factor SRM1
Swissprot	Q9FNN6	1e-100	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A0D3G1P5	0.0	A0A0D3G1P5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H7G8	0.0	A0A0E0H7G8_ORYNI; Uncharacterized protein
STRING	ONIVA04G28100.2	0.0	(Oryza nivara)
STRING	OBART04G29570.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6376	38	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	6e-79	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]