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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G29160.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 814aa MW: 90334.4 Da PI: 5.9187 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.4 | 1.1e-22 | 153 | 254 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d + +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ OBART04G29160.2 153 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WN 242 99***********************9*****86555544..8************************************************..88 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++ +l+++++r+ OBART04G29160.2 243 EKNQLLLGIRRA 254 99999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.72E-48 | 138 | 282 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-41 | 145 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.30E-21 | 152 | 253 | No hit | No description |
Pfam | PF02362 | 7.5E-21 | 153 | 254 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.224 | 153 | 255 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.4E-23 | 153 | 255 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-32 | 279 | 362 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.6E-7 | 709 | 799 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.9E-7 | 711 | 790 | No hit | No description |
PROSITE profile | PS51745 | 24.037 | 715 | 799 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MVAISELGLR VCASLVWSEE EMSSSSAASI GPPPPPAPPE EEKKCLNSEL WHACAGPLVC 60 LPTVGTRVVY FPQGHSEQVA ASTNKEVEGH IPNYPNLPAQ LICQLHDVTM HADVETDEVY 120 AQMTLQPLNP QEQNDAYLPA EMGIMSKQPT NYFCKTLTAS DTSTHGGFSV PRRAAERVFP 180 PLDFTQQPPA QELIARDIHD IEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI 240 WNEKNQLLLG IRRASRPQTV MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS 300 EFVIPLSKYI KAVFHTRISV GMRFRMLFET EESSVRRYMG TITEVSDADP VRWPSSYWRS 360 VKVGWDESTA GERPPRVSLW EIEPLTTFPI NALMWLRGVA GEGGFQSLNF QSPGIGSWGQ 420 QRLHPSLLSS DHDQYQAVVA AAAASQSGGY LKQQFLHLQQ PMQSPQEHCN LNPLLQQQIL 480 QQASQQQIIN PDAQNIQTML SPSAIQQQLQ QLQQMQQVQN DQKQKIQPDQ SYQVPTSAVL 540 PSPTSLPSHL REKFGFSDPN ANSSSFITSS SSDNMLDSSF LQGSSKAVDL SRFNQPVASE 600 QQQQQQQQQA WKQKFMGSQS VSFGGSVLHN SPTSKDGSVE NKIGRDVQNQ SLFSPQVDSS 660 SLLYNMVPNL TSNVSDGNLS TIPSGSTYLQ NAVYGCLDDS SGLLQNTGEN DPATRTFVKV 720 YKSGSVGRSL DITRFSNYAE LREELGQMFG IKGQLDDPDR SGWQLVFVDR ENDVLLLGDD 780 PWESFVNSVW YIKILSPEDV HKMGKQGNDP RYLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 42 | 383 | 47 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071298 | 0.0 | AB071298.1 Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds. | |||
GenBank | AK067150 | 0.0 | AK067150.1 Oryza sativa Japonica Group cDNA clone:J013096O18, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015636872.1 | 0.0 | auxin response factor 12 isoform X1 | ||||
Swissprot | Q0J951 | 0.0 | ARFL_ORYSJ; Auxin response factor 12 | ||||
TrEMBL | A0A0D3G1I8 | 0.0 | A0A0D3G1I8_9ORYZ; Auxin response factor | ||||
STRING | OBART04G29160.1 | 0.0 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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