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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART04G28690.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C3H |
Protein Properties |
Length: 479aa MW: 50886.4 Da PI: 8.7297 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART04G28690.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 24.6 | 4.3e-08 | 275 | 300 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C + Ck+Gd+C+FaHg+
OBART04G28690.1 275 KTRMCTKYNTAEGCKFGDKCHFAHGE 300
9***********************96 PP
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2 | zf-CCCH | 37.3 | 4.6e-12 | 446 | 471 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
ykt+lC +f + GtC +GdrC+FaHg+
OBART04G28690.1 446 YKTKLCENFVK-GTCTFGDRCHFAHGE 471
9**********.*************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF05553 | 6.8E-14 | 182 | 216 | IPR008480 | Protein of unknown function DUF761, plant |
PROSITE profile | PS50103 | 6.981 | 201 | 235 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.2 | 221 | 232 | No hit | No description |
PROSITE profile | PS50103 | 13.892 | 273 | 301 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.046 | 273 | 300 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-13 | 274 | 305 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-7 | 274 | 304 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 275 | 300 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 1.05E-13 | 340 | 415 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 8.9E-11 | 344 | 414 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 1.6E-14 | 344 | 414 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.257 | 345 | 409 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.0E-10 | 347 | 409 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.73E-13 | 347 | 409 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-14 | 444 | 475 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-9 | 444 | 475 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.488 | 445 | 472 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-8 | 445 | 471 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 446 | 471 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 479 aa
Download sequence Send
to blast |
MAPLFHMEAL LPSSISPKLN SILHSHIYPQ VGHVFRALAK FKSLLLDVVR KKRAPTRGGG 60 GKKYAIGYRS RPEKSKKRIA SFMKLLRFNW AAAAAVTPAR AKDLELHYHP YYYDYDDSTW 120 NVVVPADGAA EELRGGGGDD GEDCGYLCWL EEETSADALP AAGEGEDGGN GNGDGDGNGA 180 VNEIDRLAER FIARCHAKFL LEKQESYRRY QEMMARSITI GCPFGEGCHF SHFVPGGYQA 240 VAKTLNLGNP AVPAPARAPT DHAAGGNSHP ASSGKTRMCT KYNTAEGCKF GDKCHFAHGE 300 RELGKPAYMS YESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI SVDASLAGGI 360 IGKGGVNTKQ ICRVTGVKLS IRDHESDPNL KNIELEGNFD QIKQASNMVG ELIATISAST 420 PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG ENEQRKGAA
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL606646 | 0.0 | AL606646.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
GenBank | CR855038 | 0.0 | CR855038.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H1005F08, complete sequence. |
GenBank | CT833835 | 0.0 | CT833835.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA025P11, full insert sequence. |