PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

AP2

Protein Properties

Length: 463aa MW: 48985.6 Da PI: 9.9338

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G27540.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.3	1e-14	205	255	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g OBART04G27540.1 205 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 255 89******.7**5553..2.26********************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	9.756	89	171	IPR001471	AP2/ERF domain
SMART	SM00380	1.5E-5	128	177	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.92E-6	141	172	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.8E-8	142	171	IPR001471	AP2/ERF domain
CDD	cd00018	2.33E-24	205	265	No hit	No description
SuperFamily	SSF54171	1.96E-18	205	265	IPR016177	DNA-binding domain
Pfam	PF00847	1.0E-10	205	255	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.4E-17	206	263	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.489	206	263	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-33	206	269	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSAATLAGEA EARSGGGGRR ARARQPAEAR RGCGGPLAVG MVVVGAFSRR RPYCAALAHA 60 APRWGMVARA RRPPRPLRAS GARQERAAGW RGDTVAAGQA QAGDATPNPT RAAVAQLAVP 120 QRHVLPPHRA MGIAHMGLWQ AGGFDTAHAA ARAYDRAAIK FRGVEADINF SLEDYEDDLK 180 QQSDHEEEFV HVLRRQSTGF PRGNSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEE 240 EAARAYDRAA IKCNGKDAVT NFDPSIYAGE FEPPAAATGD AAEHNLDLSL GSSAGSKRGN 300 VDGGGDDEIT GGGGGGAGSD QRVPMAFDLD WQTAAARSTK AKFDQNSNHP QMPPVLQVTH 360 LPFSPRHHHQ FLSNGDPGTA GGLSLTIGAG MAGHWPPQQQ QGWGNAGGMS WPLPPHPPPP 420 PTNAAAAATA TAAAASSRFP PYIATQASTW LQKNGFHSLT RPT

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSAATLAGEA EARSGGGGRR ARARQPAEAR RGCGGPLAVG MVVVGAFSRR RPYCAALAHA  60
APRWGMVARA RRPPRPLRAS GARQERAAGW RGDTVAAGQA QAGDATPNPT RAAVAQLAVP  120
QRHVLPPHRA MGIAHMGLWQ AGGFDTAHAA ARAYDRAAIK FRGVEADINF SLEDYEDDLK  180
QQSDHEEEFV HVLRRQSTGF PRGNSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEE  240
EAARAYDRAA IKCNGKDAVT NFDPSIYAGE FEPPAAATGD AAEHNLDLSL GSSAGSKRGN  300
VDGGGDDEIT GGGGGGAGSD QRVPMAFDLD WQTAAARSTK AKFDQNSNHP QMPPVLQVTH  360
LPFSPRHHHQ FLSNGDPGTA GGLSLTIGAG MAGHWPPQQQ QGWGNAGGMS WPLPPHPPPP  420
PTNAAAAATA TAAAASSRFP PYIATQASTW LQKNGFHSLT RPT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269\|PubMed:22408071}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FO082280	0.0	FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015636848.1	0.0	AP2-like ethylene-responsive transcription factor TOE3 isoform X1
Swissprot	B8AVJ9	0.0	APL25_ORYSI; APETALA2-like protein 5
TrEMBL	A0A0D3G0Y9	0.0	A0A0D3G0Y9_9ORYZ; Uncharacterized protein
STRING	OBART04G27540.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5514	36	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	1e-64	AP2 family protein

Publications ? help Back to Top
Zhou Y, et al. Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1. Plant Cell, 2012. 24(3): p. 1034-48 [PMID:22408071]