PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G26630.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 636aa    MW: 69923.9 Da    PI: 6.6002
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G26630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.71.3e-20102158157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  OBART04G26630.1 102 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 158
                      688999************************************************995 PP
2START156.22.6e-4926540272206
                      T-TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS
            START  72 Wdetlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158
                      +++ + +a tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q  +g+w++vdvS+ds ++ p    v +++++pSg+li++++
  OBART04G26630.1 265 FSNIVSRAVTLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNADGTWAVVDVSLDSLRPSP----VLKCRRRPSGCLIQEMP 354
                      5677889****************************************************************98....7**************** PP

                      TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      ng+skvtwvehv++++r++h++++ lv+sgla+ga++wv tl+rqce+
  OBART04G26630.1 355 NGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCER 402
                      **********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-2282157IPR009057Homeodomain-like
SuperFamilySSF466895.01E-2089159IPR009057Homeodomain-like
PROSITE profilePS5007117.0799159IPR001356Homeobox domain
SMARTSM003892.3E-20100163IPR001356Homeobox domain
CDDcd000868.77E-20101160No hitNo description
PfamPF000464.9E-18102157IPR001356Homeobox domain
PROSITE patternPS000270134157IPR017970Homeobox, conserved site
SMARTSM002341.1E-38188402IPR002913START domain
CDDcd088755.73E-83258401No hitNo description
PROSITE profilePS5084827.96260405IPR002913START domain
SuperFamilySSF559611.22E-25265404No hitNo description
PfamPF018525.6E-41268402IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-5284398IPR023393START-like domain
SuperFamilySSF559612.33E-14423626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MERREIFQVA DLAHILRGKP VDHLQQPNLL DNHQFQQAFQ HQQQQHHLLD QIPATTAESG  60
DNMIRSRASD PLGGDEFESK SGSENVDGVS VDDQDPNQRP RKKRYHRHTQ HQIQEMEAFF  120
KECPHPDDKQ RKELSRELGL EPLQVKFWFQ NKRTQMKNQH ERHENSQLRS DNEKLRAENM  180
RYKEALSSAS CPNCGGPAAL GEMSFDEHHL RIENARLREE IDRISAIAAK YVGKPMVPFP  240
VLSNPMAAAA SRAPLDLPNQ YAAVFSNIVS RAVTLEVLST GVAGNYNGAL QVMSVEFQVP  300
SPLVPTRESY FVRYCKQNAD GTWAVVDVSL DSLRPSPVLK CRRRPSGCLI QEMPNGYSKV  360
TWVEHVEVDD RSVHNIYKLL VNSGLAFGAR RWVGTLDRQC ERLASVMASN IPTSDIGVIT  420
SSEGRKSMLK LAERMVVSFC GGVTASVAHQ WTTLSGSGAE DVRVMTRKSV DDPGRPPGIV  480
LNAATSFWLP WDILSNGGIV QEMAHIANGR DQGNCVSLLR VNSSNSNQSN MLILQESCTD  540
ASGSYVIYAP VDVVAMNVVL NGGDPDYVAL LPSGFAILPD GPDGGGGSLL TVAFQILVDS  600
VPTAKLSLGS VATVNSLIAC TVERIKAAVS GESNPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1016450.0AB101645.1 Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659894.10.0PREDICTED: homeobox-leucine zipper protein ROC1
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A0D3G0N60.0A0A0D3G0N6_9ORYZ; Uncharacterized protein
STRINGOBART04G26630.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]