PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G24870.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 439aa    MW: 45983.5 Da    PI: 7.5731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G24870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.14.3e-053313681254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +++eYIk L
  OBART04G24870.1 331 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 368
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.935319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-11329382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-5329372No hitNo description
Gene3DG3DSA:4.10.280.104.2E-8329377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGDHQMMHAA PAAMYNGGGG GGTTSSHGVW WSNAVGVPAA ATCSTTTELA GYTVWSSALA  60
AGYDGMVADN GGKQAKSTTT ASSESPGNNS SVTFQEPASI PDPAAVAAVP QPGLAGFTDW  120
TQPFMNNGAG LHEFLQDGHH DMSASSLMNH SSNNLALQQA GHHHELLSSF GSDLLLSPTS  180
PYGGFQSSLL RSLMEPTAKQ QQQQPALAGL QQYHQYQQQM GHTPAAAAKF AQAVGARDSL  240
QFTNDAPFWN PSAGFGMPAA VAVAAAAAQD QASVRSAKRS SPAPPRAAAT LALKTAMEGV  300
GDSSSVITKK ETAFKKPRLE TPSPLPTFKV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE  360
TIEYIKFLHD QVGALSAPYL KNGAHQVPHL KNSSPDKSKH GEISLKGRGL CLVPISSTFA  420
VASEVPVELW TPFGANFIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8327010.0CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633969.10.0transcription factor bHLH112
TrEMBLA0A0D3G0100.0A0A0D3G010_9ORYZ; Uncharacterized protein
STRINGOBART04G24870.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-48bHLH family protein