PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G24140.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 241aa    MW: 28575.1 Da    PI: 8.8469
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G24140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.21.2e-199702186
         trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                       +++++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+fd+l+
  OBART04G24140.1  9 AAARRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 70
                     4456799************************************99999974....678******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.33146IPR017877Myb-like domain
PfamPF138375.5E-171271No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MERESAAAAA ARRSAKTLWE AVSARLRERG YRRTAEQCKC KWKNLVNRYK GKETSDPENG  60
RQCPFFDELH AVFTERARTM QQQLLESESG PSVKKKLKRP SGDLSSEDSD DEEDGGGDSG  120
DEKPIRSRKR KTADKRQQSQ RMAEKSRTSI SSIHELLQDF LVQQQRMDIQ WHEMMERRSQ  180
ERIVFEQEWR QSMQKLEQER LMLEHTWMER EEQRRMREEA RAEKRDALLT TLLNKVLQED  240
L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131SRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1057200.0AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence.
GenBankAL6066380.0AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552280.0CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880753.11e-164uncharacterized protein LOC4336887
TrEMBLA0A0D3FZS91e-174A0A0D3FZS9_9ORYZ; Uncharacterized protein
STRINGOBART04G24140.11e-175(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.12e-24Trihelix family protein