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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART04G24140.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 241aa MW: 28575.1 Da PI: 8.8469 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART04G24140.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 62.2 | 1.2e-19 | 9 | 70 | 21 | 86 |
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+++++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+
OBART04G24140.1 9 AAARRSAKTLWEAVSARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 70
4456799************************************99999974....678******98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MERESAAAAA ARRSAKTLWE AVSARLRERG YRRTAEQCKC KWKNLVNRYK GKETSDPENG 60 RQCPFFDELH AVFTERARTM QQQLLESESG PSVKKKLKRP SGDLSSEDSD DEEDGGGDSG 120 DEKPIRSRKR KTADKRQQSQ RMAEKSRTSI SSIHELLQDF LVQQQRMDIQ WHEMMERRSQ 180 ERIVFEQEWR QSMQKLEQER LMLEHTWMER EEQRRMREEA RAEKRDALLT TLLNKVLQED 240 L
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK105720 | 0.0 | AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence. |
GenBank | AL606638 | 0.0 | AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
GenBank | CR855228 | 0.0 | CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence. |