PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART04G23600.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 325aa MW: 35448.9 Da PI: 6.843

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART04G23600.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.6	7.9e-15	15	64	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ +k+ Gg+ +W+ +r g++R++k+c++rw +yl OBART04G23600.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRGLPRAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP
2	Myb_DNA-binding	51.7	2e-16	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E+ l++++++ lG++ W+tIa ++ gRt++++k++w+++ OBART04G23600.1 70 RGNFSDDEERLIIRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-20	7	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.76	10	64	IPR017930	Myb domain
SuperFamily	SSF46689	2.17E-27	12	111	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-10	14	66	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-12	15	64	IPR001005	SANT/Myb domain
CDD	cd00167	7.76E-9	17	64	No hit	No description
PROSITE profile	PS51294	26.128	65	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-25	68	119	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-15	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-14	70	114	IPR001005	SANT/Myb domain
CDD	cd00167	2.02E-11	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RGLPRAAGLN RCGKSCRLRW 60 TNYLRPDIRR GNFSDDEERL IIRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL 120 RMGIDPVTHQ RLPPDLLADG GGLGAASPLL SAVASLGSLD TALRQFQLLQ HLLNSITSSS 180 SDVAATAGLM ATNLAATNTM VNSSSNVASF QEQMNALAHA NYQPGYLRDV VPSFPGQDMA 240 PQLNSTSSTP STAPVLRSSA EPADQCCNDA ALVPGTYPRE VAASVDHWKV QDFPSLEPLE 300 LPNLSTLESD LDPFWKEILE SSFRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-25	15	119	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269\|PubMed:24902892}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269\|PubMed:24902892}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243271	0.0	AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
GenBank	AL662952	0.0	AL662952.6 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12, complete sequence.
GenBank	AL731579	0.0	AL731579.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01, complete sequence.
GenBank	AP014960	0.0	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855235	0.0	CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635814.1	0.0	transcription factor MYB41
Swissprot	Q9S9Z2	8e-67	MYB93_ARATH; Transcription factor MYB93
TrEMBL	A0A0D3FZK9	0.0	A0A0D3FZK9_9ORYZ; Uncharacterized protein
STRING	OBART04G23600.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6265	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02940.1	1e-70	myb domain protein 107

Publications ? help Back to Top
Gibbs DJ,Coates JC AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis. Plant Signal Behav, 2014. 9(10): p. e970406 [PMID:25482809]