PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G21910.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 486aa    MW: 50816.9 Da    PI: 8.6004
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G21910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-057193123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C+k F r  nL+ H r H
  OBART04G21910.1 71 FVCEVCNKGFQREQNLQLHRRGH 93
                     89*******************88 PP
2zf-C2H211.90.00069148170123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k++  +s+ k H + +
  OBART04G21910.1 148 WKCDKCSKRYAVQSDWKAHSKIC 170
                      58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.5E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-77093No hitNo description
PfamPF121713.1E-57193IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0947193IPR007087Zinc finger, C2H2
SMARTSM003550.00417193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-7143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MTALLLLFLI AACHVSLGNR GEEGRKKKNT AANPRNNPTG ATEKEIFCSC ADPDAEVIAL  60
SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPAQAQRR RVYLCPEPTC  120
VHHDPARALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHSKIC GTREYRCDCG  180
TLFSRRDSFI THRAFCDALA QESSRLPPTS LSSLTSHLYG ASNAGNMALS LSQLPDLQGN  240
GAGGPGAPGP NLFNLGFFAN NGNSSGSSHE HASQGLMSND QFSGGAGGGG GSDASAAGIF  300
GGNFVGGDHV SPAGLYNDQA AMLPQMSATA LLQKAAQMGA TSSANGPGSM FRGFVGSSPH  360
MRPAAQHMDQ SDAHLNDLMN SLAGGGVNAA AMFGGTNGGG VPGAGMFDPR LCDIEHEVKF  420
SQGGGGGGGA GAGTGDGTRD FLGVGGGGIV HGMSTPRGDH HQSSSDMSSL EAEMKSASSF  480
NGRRMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34144210369Zinc finger protein JACKDAW
5b3h_F6e-34144210369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691544.10.0PREDICTED: protein indeterminate-domain 13-like
SwissprotQ8GYC11e-110IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0D3FZ120.0A0A0D3FZ12_9ORYZ; Uncharacterized protein
STRINGOBART04G21910.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-100indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]