PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G21320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bHLH | ||||||||
Protein Properties | Length: 559aa MW: 61072.6 Da PI: 5.1034 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.6 | 4.7e-13 | 383 | 429 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++h + ErrRR+++N+ f L++++P+ K++Ka+iLe+++ Y+k L OBART04G21320.1 383 KNHVISERRRREKLNEMFLILKSIVPSiH------KVDKASILEETIAYLKVL 429 57999**********************66......***************977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-46 | 32 | 208 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.834 | 380 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.32E-15 | 383 | 434 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 383 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-10 | 384 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.9E-16 | 384 | 447 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.6E-14 | 386 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 559 aa Download sequence Send to blast |
MGYLKLQTCV VMASAPPVQE EPLQPGTNHF RSLLAAAVRS ISWSYAIFWS ISTSCPGVLT 60 WNDGFYNGVV KTRKISKSAD LTAGQLVVQR SEQLRELYYS LLSGECDHRA RRPIAALSPE 120 DLADTEWYYV VCMTYSFQPG QGLPGKSYAS NASVWLRNAQ SADSKTFLRS LLAKTIICIP 180 FTSGVLELGT TDPVLEDPNL VNRIVAYFQE LQFPICLEVL MSTSPSPNET EDADIVSEGL 240 ITHNAIEEGQ MVVSDECVSN ANRDPITMEI DELYSIYEDL DLDTVRFLED NGWPVNPSSF 300 QLVPASSTEA VAAAAAANDV DGVANSQVSC FMAWKSAKSN EMAVPVVTGI ESQKLLKKVV 360 DCGARMSTGR GSRAALTQES GIKNHVISER RRREKLNEMF LILKSIVPSI HKVDKASILE 420 ETIAYLKVLE KRVKELESSS EPSHQRATET GQQRRCEITG KELVSEIGVS GGGDAGREHH 480 HVNVTVTDKV VLLEVQCRWK ELVMTRVFDA IKSLCLDVLS VQASAPDGLL GLKIQAKFAC 540 SGSVAPGMIS EALQKAIGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-17 | 16 | 208 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-17 | 16 | 208 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-17 | 16 | 208 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-17 | 16 | 208 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 388 | 393 | ERRRRE |
2 | 389 | 394 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111704 | 0.0 | AK111704.1 Oryza sativa Japonica Group cDNA clone:J023013E24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635094.1 | 0.0 | anthocyanin regulatory R-S protein | ||||
Swissprot | P13027 | 1e-171 | ARRS_MAIZE; Anthocyanin regulatory R-S protein | ||||
TrEMBL | A0A0D3FYT4 | 0.0 | A0A0D3FYT4_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G21320.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 6e-80 | bHLH family protein |
Publications ? help Back to Top | |||
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