PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G21150.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 692aa    MW: 73077.3 Da    PI: 6.8512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G21150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS265.41.9e-813356913374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a + g+   a+++Larl+++  p g+p+ R a+y++ AL   la+      +  +++ ts+ +++ +l+a+k fs++sP+l+f+++
  OBART04G21150.1 335 DELAAAAKATEVGNSIGAREILARLNQQLPPIGKPFLRSASYLKDALLLALAD-----GHHAATRLTSPLDVALKLTAYKSFSDLSPVLQFANF 423
                      7899*************************************************.....6666777888888*********************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      t  qa+l+++++   +++ +iDfd++ G+QW+++lq+La R      + p+l++T+++s++s++  el+ t+++L++fA+ lg+pfefn++   
  OBART04G21150.1 424 TVTQALLDEIASTtaSCIRVIDFDLGVGGQWASFLQELAHRCgsggVSLPMLKLTAFVSAASHHPLELHLTQDNLSQFAADLGIPFEFNAI--- 514
                      ********999887799************************96544459*****************************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL   + +E++aV+l +              + +++L+lvk+l Pk+vv ++  +d+++ +F ++fl++l+ +  l++sl+a  ++
  OBART04G21150.1 515 NLDAFDPMELIAPTaDEVVAVSLPVGCSART--------PLPAMLQLVKQLAPKIVVAIDYGSDRSDLPFSQHFLNCLQSCLCLLESLDAA-GT 599
                      999999999966557**********877776........5677*********************************************999.89 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      ++++ +k+Er+l++++++++v  + ++      ++  Wr  l++aGF p pls+ a++qa++ll++v+++g++ve++ + l l+W++ +LvsvS
  OBART04G21150.1 600 DADAVSKIERFLIQPRVEDAVLGRRRA-----DKAIAWRTVLTSAGFAPQPLSNLAEAQADCLLKRVQVRGFHVEKRGAGLALYWQRGELVSVS 688
                      99*******************977665.....88899********************************************************* PP

             GRAS 372 aWr 374
                      aWr
  OBART04G21150.1 689 AWR 691
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.434307671IPR005202Transcription factor GRAS
PfamPF035146.4E-79335691IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MRAAPFSADG NGAAELAGSI EALLWPEDKG GGGGGGGGSL LVEPRSVLDC RGSPSPPNST  60
STLSSSHAAR RILYLPAWRR LRRAAQPPPK PPDGRPPANT AAAVAESWDA MLGDAAAAAG  120
QEQTFLNWIM AAPGDMEPQA PGLSQQQLLA NAAGFGFPLQ HHPGGVSSPA ALASDLSSSG  180
GRSLTSSSGS NSKATSAFGL LSPEAALQPP PATTAPFHNG ADMKPPLLGL PSPTLLLNQH  240
QPTPASTLFM PFPSFSDHQQ QPLLQPPPKR HHSVPDNLFL LHNQPQPPPP APAQCLPFPT  300
LHSTVPFQLQ PSMQHPRNAM KSTAAAAAQQ QHLLDELAAA AKATEVGNSI GAREILARLN  360
QQLPPIGKPF LRSASYLKDA LLLALADGHH AATRLTSPLD VALKLTAYKS FSDLSPVLQF  420
ANFTVTQALL DEIASTTASC IRVIDFDLGV GGQWASFLQE LAHRCGSGGV SLPMLKLTAF  480
VSAASHHPLE LHLTQDNLSQ FAADLGIPFE FNAINLDAFD PMELIAPTAD EVVAVSLPVG  540
CSARTPLPAM LQLVKQLAPK IVVAIDYGSD RSDLPFSQHF LNCLQSCLCL LESLDAAGTD  600
ADAVSKIERF LIQPRVEDAV LGRRRADKAI AWRTVLTSAG FAPQPLSNLA EAQADCLLKR  660
VQVRGFHVEK RGAGLALYWQ RGELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-283336914375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066330.0AL606633.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010H02, complete sequence.
GenBankAL6066470.0AL606647.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E24, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637143.10.0scarecrow-like protein 27
TrEMBLA0A0D3FYR60.0A0A0D3FYR6_9ORYZ; Uncharacterized protein
STRINGOBART04G21150.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-83GRAS family protein