PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G16900.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 309aa    MW: 33102.3 Da    PI: 8.3959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G16900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-12237282655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+ l+P+     +k  s +++L +Av++Ik Lq
  OBART04G16900.1 237 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVDHIKGLQ 282
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.215231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-15234297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-13235286No hitNo description
Gene3DG3DSA:4.10.280.105.8E-14236296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9237282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13237287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRQQHYGGGG SGAAEISLGH GHGHGHGHGG QHHFHQFGVE AKDGGGGDQS GFLTRHNSSP  60
PGFFSSPVMD NGFSSSARPA GSSLGEVRHG AMSSSSNNNK KMKAPLSFAS SRQGSGGLSQ  120
ISEDGIPDLT DSIHGAAHHH GRSEENVSTH DHVVRSFSSG GFSIGSWEDS NSIVFSTSTG  180
KSGAHGNDDI IATLSNYESQ LVAPREMAGV EKYLQMQHDQ VPFRVRAKRG CATHPRSIAE  240
RERRTRISEK LRKLQALVPN MDKQTSTSDM LDLAVDHIKG LQSQLQTLKE DKEKCTCSCK  300
QASRNRPAD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636683.10.0transcription factor bHLH129
TrEMBLA0A0D3FXB70.0A0A0D3FXB7_9ORYZ; Uncharacterized protein
STRINGOBART04G16900.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-45bHLH family protein