PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G16110.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 390aa    MW: 43417.6 Da    PI: 5.0774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G16110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.92.5e-29872282128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........t 78 
                      p G++F+P+d e++ e+L++k++  +      ++ +   ++ v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+          
  OBART04G16110.1  87 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEGVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaasD 178
                      88**********99.99****998887887764443444777778**********.66778899*******************76776666554 PP

              NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                      ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  OBART04G16110.1 179 ENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 228
                      4678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-3470247IPR003441NAC domain
PROSITE profilePS5100528.47386247IPR003441NAC domain
PfamPF023653.7E-1287228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MAFRIDGQKI FTLSECDFGR NLTLPETLNV RPWIIAGGKV IATKIRNATQ LLSCKLGELV  60
PEAWRECPNC KCHIDNSDVT LQWPEFPDGV KFDPSDLEVL EHLERKINLG NPGPQGLIDH  120
FIPTLEGVEG ICYTHPENLP GIKLDGTSSH FFHRISNAYG SGQRKRRKIS HTGHAASDEN  180
IRWHKTGKSK QIYHNGVLKG WKKILVLYKG SKKNKIVQAN WVMHQYNLGV EEGGEDGELV  240
VSKVFYQLSS KQTGSPEMDS VTEEASDALT IRSDPITPIT NPPLPRCLMN SPCDTEQNGT  300
ISHDREGECS TSTLRPTVEP GNRAGCSAGA STTGDFDEDL LQRCEFPGDP VPTLDDTLPF  360
LYTDETDLFS WEDFQFGSQE SFGWVDGDHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6303300.0AB630330.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Wataribune.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0D3FX250.0A0A0D3FX25_9ORYZ; Uncharacterized protein
STRINGOBART04G16110.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.16e-62NAC family protein