PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G14990.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 499aa    MW: 53915.9 Da    PI: 8.4813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G14990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl
  OBART04G14990.1 14 KGPWTPEEDQKLLAYIEQHGHGCWRSLPSKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.41.2e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  OBART04G14990.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.6E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.859961IPR017930Myb domain
SuperFamilySSF466891.01E-2911108IPR009057Homeodomain-like
SMARTSM007177.9E-151363IPR001005SANT/Myb domain
PfamPF002492.7E-161461IPR001005SANT/Myb domain
CDDcd001677.33E-121661No hitNo description
PROSITE profilePS5129425.89162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.7E-2665116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.5E-1667112IPR001005SANT/Myb domain
CDDcd001672.18E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTPE EDQKLLAYIE QHGHGCWRSL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPRRPSYSD SSALVPQMGG GNESFGVVLL EMLTGRRSMD KKRPAGFGYV FKGWIDPNST  180
SPAKLGTDLT VVVRSLEQDA LQGHREWVQE TKSWTASWCR PDLVICPLPT GWMWILEIEE  240
ERRCGADLVW ERRRSGGQRP ATGRGEEQWR GGSWGRLPLA LDVAGGGGVG MFVASCAAAT  300
GAALSATGHI LACLLLAGES RRDSSARGGL WKAAAIVAAF WKKSGAGSRR SRPPGSPVAA  360
AAAHGLDSPT STLSFSDSAA LATVLEAHGA TAAAARAAMQ PMQAYDEACK DQHWGDVDAA  420
DVGFPGAGAG FTGLLLDGSL NQIPRPAGRD AEADGEFQET EEEKNYWNSI LNLVNSSSAP  480
MSTAVVVPAS HAYSPAPDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-26121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2884150.0AK288415.1 Oryza sativa Japonica Group cDNA, clone: J090031E07, full insert sequence.
GenBankAL6064600.0AL606460.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635111.11e-84transcription factor MYB106
RefseqXP_021318372.14e-84transcription factor MYB16
RefseqXP_025824773.12e-84transcription factor MYB16-like
TrEMBLA0A0D3FWN60.0A0A0D3FWN6_9ORYZ; Uncharacterized protein
STRINGOBART04G14990.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-81myb domain protein 16