PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART04G14970.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 314aa    MW: 34603.2 Da    PI: 8.6487
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART04G14970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1782.5e-55121371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeel+++yL+kkv++ ++ +  +++e+d++k+ePwdLp+ +k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdk++++
  OBART04G14970.1  12 LPPGFRFHPTDEELITHYLAKKVADARFAA-LAVAEADLNKCEPWDLPSLAKMGEKEWYFFCLKDRKYPTGLRTNRATESGYWKATGKDKDIFR 104
                      79*************************999.67***************8888899*************************************** PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++lvg+kktLvfy+grapkgek+ Wvmheyrl
  OBART04G14970.1 105 -RKALVGMKKTLVFYTGRAPKGEKSGWVMHEYRL 137
                      .999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-607143IPR003441NAC domain
PROSITE profilePS5100553.53512161IPR003441NAC domain
PfamPF023655.9E-3013137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQHQGQAGM DLPPGFRFHP TDEELITHYL AKKVADARFA ALAVAEADLN KCEPWDLPSL  60
AKMGEKEWYF FCLKDRKYPT GLRTNRATES GYWKATGKDK DIFRRKALVG MKKTLVFYTG  120
RAPKGEKSGW VMHEYRLHGK LHAAALGLLH GKPASSKVHE RTYAACVCLV DQFDRSIDRS  180
IAQAGLTRRG FFLLVRRTRA HVTCFSNALE GQFFNPTAVH GHGGGDSSPF MASFTQYGQL  240
HHGVSLVQLL ESCNGYGGLV DMAASGSQLQ PAACGGERER LSASQDTGLT SDVNPEISSS  300
SGQKFDHEAA LWGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5131376140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0710200.0AK071020.1 Oryza sativa Japonica Group cDNA clone:J023080H09, full insert sequence.
GenBankCT8286360.0CT828636.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN012A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633922.10.0NAC domain-containing protein 92
RefseqXP_015633924.10.0NAC domain-containing protein 92
SwissprotQ9FLJ24e-80NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0D3FWN40.0A0A0D3FWN4_9ORYZ; Uncharacterized protein
STRINGOBART04G14970.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.26e-67NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]