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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART04G14000.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 387aa MW: 41078.2 Da PI: 7.3497 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART04G14000.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 29.3 | 2.3e-09 | 56 | 119 | 20 | 86 |
trihelix 20 rlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+l+rg+l+ p+W+ev++++ +++g+ + s +qCk++++ l+k+yk +++ + ++++f +l+
OBART04G14000.1 56 ALGRGSLRHPQWQEVADAVsSREGYAKapkSDVQCKNRIDTLKKKYKIERAKPAS-------SWQFFGRLD 119
567999*************87888866222667**************99988876.......488888876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 387 aa
Download sequence Send
to blast |
MDDDDAAASA SPSPSPSPVA SALPVADPVT VAAGPPSGLL ALALPIQKQQ HAAFVALGRG 60 SLRHPQWQEV ADAVSSREGY AKAPKSDVQC KNRIDTLKKK YKIERAKPAS SWQFFGRLDD 120 LLAPTFNQKP GGNGGGGVGA SVNGRNTVPA ALRVGFPQRS RTPLMPAPVS AVKRRAPSPE 180 PSASSESSDG FPPEREPAFP PLPLPPPPNG KRSRADEGRG GGAGGGGDRA QGLRELAQAI 240 RRFGEAYERV ETAKLEQSAE MERRRLDFAS ELESQRVQFF LNTQMELSQV KNHSSSPANA 300 AAPPGATGGA GGTSRRMASV NDDSASGNYH RRYRVSDGGR HRHHPQPPPS RPHYQYHENN 360 IAVAAAAAAS DGEQSDDEED DEEEESQ
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AL731593 | 0.0 | AL731593.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027P08, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CR855182 | 0.0 | CR855182.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0140O07, complete sequence. |
GenBank | CT837970 | 0.0 | CT837970.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104F09, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G14180.1 | 6e-20 | sequence-specific DNA binding transcription factors |