PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G10420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 82aa MW: 8570.06 Da PI: 8.926 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.7 | 8.4e-10 | 27 | 51 | 20 | 44 |
HHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 20 ilKKAeELSvLCdaevaviifsstg 44 +lKKAeEL vLCda v +++s +g OBART04G10420.1 27 LLKKAEELAVLCDAHVGFVVLSCSG 51 8********************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.44E-8 | 24 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-9 | 26 | 51 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.923 | 27 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MAAARGCLAS RAYIRGRAAH LRASARLLKK AEELAVLCDA HVGFVVLSCS GDDANPHHFA 60 APATYAPILS LPLPLLPPNL LG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CR855097 | 5e-85 | CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880634.1 | 2e-18 | MADS-box transcription factor 33-like isoform X3 | ||||
TrEMBL | A0A0D3FV44 | 4e-50 | A0A0D3FV44_9ORYZ; Uncharacterized protein | ||||
STRING | OBART04G10420.1 | 7e-51 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15493 | 11 | 17 |