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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OBART04G02090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 346aa MW: 35384 Da PI: 5.8883 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.0008 | 245 | 267 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H OBART04G02090.1 245 HECSICGAEFASGQALGGHMRRH 267 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.9E-11 | 135 | 160 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.96E-8 | 135 | 158 | No hit | No description |
PROSITE profile | PS50157 | 10.201 | 136 | 163 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.24 | 136 | 158 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 138 | 158 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.96E-8 | 240 | 267 | No hit | No description |
Pfam | PF13912 | 1.5E-12 | 244 | 268 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.263 | 245 | 272 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 245 | 267 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 247 | 267 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGVQEEAALA AAVVKGKRSK RQRAHAAAAV VVPIAASATA EEEESMESSL SLSGGAAAEG 60 SSTTSPLLTT TTTARGDEAV SGCVTEEEED MALCLMLLAS GGHGERALDA EAAVAKEAKF 120 RSRRPADGAG AGEFVYECKT CSKCFPSFQA LGGHRTSHKK PRLVAPPATT EPAADDKVKP 180 AIPETAAAAA AEEKPPKPSP PRPPASRPIA TDPTVLAIPV IPKQEVLDAN SAAAIASVSK 240 QPRVHECSIC GAEFASGQAL GGHMRRHRPL IPASASSAVV SVLDAVDAPR QKEKSLLELD 300 LNMPAPCDDA AAETTTSSAA TSPAFAFAVS DRSPLLVPAA LVGCHY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT833697 | 0.0 | CT833697.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN043G17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634434.1 | 1e-148 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A0D3FSE4 | 0.0 | A0A0D3FSE4_9ORYZ; Uncharacterized protein | ||||
TrEMBL | I1PIY4 | 0.0 | I1PIY4_ORYGL; ZOS4 | ||||
STRING | ORGLA04G0015300.1 | 0.0 | (Oryza glaberrima) | ||||
STRING | OBART04G02090.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 7e-27 | C2H2 family protein |