PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 387aa MW: 41727.7 Da PI: 7.2789

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G41470.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98	6e-31	199	257	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+ OBART03G41470.1 199 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 257 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.247	193	259	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.0E-30	196	259	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-26	197	259	IPR003657	WRKY domain
SMART	SM00774	4.3E-38	198	258	IPR003657	WRKY domain
Pfam	PF03106	8.7E-26	200	257	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPMPQAPHQ 60 YYPAPQITIP YHHHHHGELR RPTTIAYTDA PVPFETAGPP STVVDSYHHL TPGDAGYGMP 120 RPLALQISQH ALCGGGDVVM GGGGAGAADD GEEAIRISPL TPSAHHQMMK RKNEVKKVVC 180 IPAPPATSSR GGGGEVIPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC MARKQVERSR 240 SDPNMLVITY TAEHNHPWPM QRNVLAGYAR SHHSTHATAS SSRHKQQQQQ QTNQLQPALI 300 TSSSSSSSSP FNLYADVVLG GQQANMMMTT EGAGAGLGIQ PSAADEVFAE LEELEPDNPT 360 MINANMQVYS TTSRPGVSSY DHQWHKF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDMMEEEAAN AATAQAAAAG DLADVVARAN ARAFLVSTPH HHPSPLHPLP PPPMPQAPHQ  60
YYPAPQITIP YHHHHHGELR RPTTIAYTDA PVPFETAGPP STVVDSYHHL TPGDAGYGMP  120
RPLALQISQH ALCGGGDVVM GGGGAGAADD GEEAIRISPL TPSAHHQMMK RKNEVKKVVC  180
IPAPPATSSR GGGGEVIPSD LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC MARKQVERSR  240
SDPNMLVITY TAEHNHPWPM QRNVLAGYAR SHHSTHATAS SSRHKQQQQQ QTNQLQPALI  300
TSSSSSSSSP FNLYADVVLG GQQANMMMTT EGAGAGLGIQ PSAADEVFAE LEELEPDNPT  360
MINANMQVYS TTSRPGVSSY DHQWHKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-24	172	259	2	79	Disease resistance protein RRS1
5w3x_D	4e-24	172	259	2	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109795	0.0	AK109795.1 Oryza sativa Japonica Group cDNA clone:002-147-E06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630180.1	0.0	uncharacterized protein LOC4334831
Swissprot	O64747	9e-56	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0D3FRJ2	0.0	A0A0D3FRJ2_9ORYZ; Uncharacterized protein
STRING	OBART03G41470.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	3e-55	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]