 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART03G40270.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C2H2 |
| Protein Properties |
Length: 311aa MW: 33084.7 Da PI: 4.5174 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART03G40270.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.7 | 5.2e-07 | 165 | 186 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
C+ Cgk F+r nL+ H+r H
OBART03G40270.1 165 FCGVCGKGFKRDANLRMHMRGH 186
6*******************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MMISTSADHF SNNNNNQAMY LEQDEDFSQM IMELCDFDAS STTQARHGGE AAAAAAGDAR 60
AVLTYLTFLE QKIGHLRGII SSTPNPPPQI VAAELSCIVV QLVSISKNLA AARRGGDDAD 120
ADAKHDGSSD ADEGADGDGE RAPPRGSYEV VQIEKEEILA PHVHFCGVCG KGFKRDANLR 180
MHMRGHGEEY KSAAVLAKPG GSPSRSPAAA DAAARRRLLL LPDKLFAHVA IFDGHSPALP 240
PEDYDDDAAS GQLPHAAGEA VGRTVDTNRF FSDGLMIKGS MDDERGSLSP MGLDYCEFDG 300
IDLFAAAAFD F
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC104487 | 0.0 | AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence. |
| GenBank | AK287605 | 0.0 | AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence. |
| GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
