PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OBART03G39990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 92aa MW: 10021.6 Da PI: 10.6688 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.9 | 4.1e-16 | 2 | 41 | 7 | 46 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + rqvt k rn +lKKA+EL LCdae+ +iifss+g+l OBART03G39990.1 2 TSRQVTSGKHRNDLLKKAYELALLCDAEIGLIIFSSRGRL 41 679***********************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.502 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.9E-8 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.66E-15 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-15 | 2 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-12 | 10 | 25 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-12 | 25 | 46 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 92 aa Download sequence Send to blast |
MTSRQVTSGK HRNDLLKKAY ELALLCDAEI GLIIFSSRGR LCCIATDKLL SSSPRILLDF 60 SASSRQHGKA HNGQGRVATF MLVPPGPRGH FA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC092557 | 1e-58 | AC092557.7 Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 1e-58 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 1e-58 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D3FR17 | 4e-61 | A0A0D3FR17_9ORYZ; Uncharacterized protein | ||||
STRING | OBART03G39990.1 | 8e-62 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-16 | MIKC_MADS family protein |