PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G37480.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 384aa    MW: 40121.3 Da    PI: 9.9356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G37480.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30309367259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D y+WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver+++dp ++ +tYe+eHnh 
  OBART03G37480.2 309 SDNYSWRKYGQKPIKGSPHPRGYYRCSSKkDCPARKHVERCRSDPAMLLVTYENEHNHA 367
                      69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-13267306IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.1E-32300369IPR003657WRKY domain
PROSITE profilePS5081131.031303369IPR003657WRKY domain
SuperFamilySSF1182906.8E-27306369IPR003657WRKY domain
SMARTSM007742.7E-37308368IPR003657WRKY domain
PfamPF031061.9E-26310366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDGVEEANMA AVESSKKLVA ILSKSGDPFR LMAAVAETDE AVSRFGKVVT ILSNRVGHAR  60
ARLGKRRSSP PVDPGCLMDH PLAAAASSPA PSNGRLHFSS SAATASPSPA TAAAASSAAN  120
VTPAVVDRSL FLETTLLDLN SRGAPAPAAS MAAAAKNSSK LAPAPMVNSS SSANHIQFQQ  180
PMKSFQFEQT PISDKFHIEM PRGVGGGVGG GGGKEVISFS FDNSVCTSSA ATSFFTSISS  240
QLISMSDAAT NSAAAAAAPT TKKPSSCARK ATADDDAGGK CHCPKKKKPR EKKVVTVPAI  300
SDKVADIPSD NYSWRKYGQK PIKGSPHPRG YYRCSSKKDC PARKHVERCR SDPAMLLVTY  360
ENEHNHAQPL DLSVVQQATA NPQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-203063691274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0937130.0AC093713.6 Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629206.10.0protein WRKY1 isoform X2
TrEMBLA0A0D3FQ780.0A0A0D3FQ78_9ORYZ; Uncharacterized protein
TrEMBLI1PGB70.0I1PGB7_ORYGL; Uncharacterized protein
STRINGORGLA03G0341300.10.0(Oryza glaberrima)
STRINGORGLA06G0292200.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-38WRKY DNA-binding protein 11