 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OBART03G33860.3 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
HSF |
| Protein Properties |
Length: 370aa MW: 40244.8 Da PI: 4.6126 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OBART03G33860.3 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 87.9 | 1.3e-27 | 54 | 140 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95
Fl k+ye+++d+ ++++isw gnsfvv+d + fa +Lp+yFkhsnf+SFvRQLn+Y v+ ++ weF+++ F +gkkell+
OBART03G33860.3 54 FLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTY----VDPDR---------WEFANEGFLRGKKELLK 134
9**********************************************************....55555.........***************** PP
XXXXXX CS
HSF_DNA-bind 96 kikrkk 101
+ikr++
OBART03G33860.3 135 TIKRRR 140
****97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 370 aa
Download sequence Send
to blast |
MNPLRVIVKE EELDFAAAAA AAAAGEGSPS SWAVGVMDLP RPMEGLGEAG PPPFLCKTYE 60
VVDDPGTDTV ISWGFAGNSF VVWDANAFAA VLLPRYFKHS NFSSFVRQLN TYVDPDRWEF 120
ANEGFLRGKK ELLKTIKRRR PPPSSPPSSS SSSSSSQHQQ QPAAACLEVG QFGRDGVVNR 180
LQRDKSVLIA EVVKLRQEQQ TTRAQMQAME ERISAAEQKQ QQMTVFLARA MKNPGFLQML 240
VDRQAGQHGA RNRVLEDALS KKRRRPIEYL LTRNGETCAA GESAAMLAAD GVAEPDGDTT 300
PRGDGGGGGD TESFWMQLLS LGLEEKQRED GVAGGVQESN SGGADVDNDE EDDDDDVDVL 360
VQSIYHLSPK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY332465 | 0.0 | AY332465.1 Oryza sativa (japonica cultivar-group) putative heat shock protein (HSP2) mRNA, complete cds. |
| GenBank | AY344486 | 0.0 | AY344486.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF4 mRNA, complete cds. |
| GenBank | AY998118 | 0.0 | AY998118.1 Oryza sativa heat shock protein 41 mRNA, complete cds. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Chauhan H,Khurana N,Agarwal P,Khurana P
Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
Mol. Genet. Genomics, 2011. 286(2): p. 171-87
[PMID:21792744] - Mittal D,Madhyastha DA,Grover A
Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
Plant Sci., 2012. 197: p. 102-13
[PMID:23116677]
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