PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G32400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 327aa    MW: 36546.9 Da    PI: 6.5302
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G32400.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.19.1e-982132770374
             GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeelee 160
                      ++  s+e +  +k++++++P+ kf+hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++RiTgv sp  g   + +l +
  OBART03G32400.1  21 ARFASDELTLCYKTLNDACPYSKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPtRIRITGVPSPLLGpqPAASLAA 114
                      33348889999********************************************************88777*********998888999**** PP

             GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                      t+ rL++fA+ lgv+fef + + + +++l+ +++ v+p+Ea+aVn++lql++ll +s +l     +vL+l kslsP vv++ e e+++n++ F+
  OBART03G32400.1 115 TNTRLRDFAKLLGVDFEFVP-LLRPVHELNKSDFLVEPDEAVAVNFMLQLYHLLGDSDELVR---RVLRLAKSLSPAVVTLGEYEVSLNRAGFV 204
                      ********************.599******************************88888877...***************************** PP

             GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                      +rf++al+yy +lf+sl++ + r+s er+ vEr ++g++i+ +v   ega+r+er+   ++W+  +e +GF+pvpls++a +qa+lll +++ +
  OBART03G32400.1 205 DRFANALSYYRSLFESLDVAMTRDSPERARVERWMFGERIQRAVGpEEGADRTERMAGSSEWQTLMEWCGFEPVPLSNYARSQADLLLWNYDsK 298
                      ********************************************8356889*****************************************77 PP

             GRAS 347 dgyrveeesgslv.lgWkdrpLvsvSaWr 374
                        y++ e   +++ l W++rpL++vSaWr
  OBART03G32400.1 299 YKYSLVELPPAFLsLAWEKRPLLTVSAWR 327
                      78999999999988**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.2431305IPR005202Transcription factor GRAS
PfamPF035143.1E-9521327IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MVVRRRLACG TGAPPSAEPD ARFASDELTL CYKTLNDACP YSKFAHLTAN QAILEATGAA  60
TKIHIVDFGI VQGIQWAALL QALATRPEGK PTRIRITGVP SPLLGPQPAA SLAATNTRLR  120
DFAKLLGVDF EFVPLLRPVH ELNKSDFLVE PDEAVAVNFM LQLYHLLGDS DELVRRVLRL  180
AKSLSPAVVT LGEYEVSLNR AGFVDRFANA LSYYRSLFES LDVAMTRDSP ERARVERWMF  240
GERIQRAVGP EEGADRTERM AGSSEWQTLM EWCGFEPVPL SNYARSQADL LLWNYDSKYK  300
YSLVELPPAF LSLAWEKRPL LTVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.0532753375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1469360.0AC146936.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 3 clone B1154F06 map near C10769, complete sequence.
GenBankAK0640220.0AK064022.1 Oryza sativa Japonica Group cDNA clone:001-125-A04, full insert sequence.
GenBankAK1016030.0AK101603.1 Oryza sativa Japonica Group cDNA clone:J033051K20, full insert sequence.
GenBankAK1028570.0AK102857.1 Oryza sativa Japonica Group cDNA clone:J033110P03, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628849.10.0SCARECROW-LIKE protein 7
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A0D3FNF00.0A0A0D3FNF0_9ORYZ; Uncharacterized protein
STRINGOBART03G32400.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-134GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]