PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OBART03G32070.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 95aa MW: 9708.5 Da PI: 4.1469

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART03G32070.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	56.8	5e-18	10	50	4	47
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACg 47 +Y+eC++NhAa+lG++a DGC+E++p+ +g++a+l CaA g OBART03G32070.1 10 EVYRECMRNHAAKLGTYANDGCCEYTPD---DGHPAGLLCAAGG 50 68***********************8...789*****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.3E-13	11	49	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	14.168	12	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-10	12	38	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MEQQQERPRE VYRECMRNHA AKLGTYANDG CCEYTPDDGH PAGLLCAAGG PGAGGGAQTS 60 SSTTRGGGDV GVGLSPAMGG DGEDDEEVRG SEMCL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC091532	1e-73	AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence.
GenBank	AP014959	1e-73	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-73	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015630147.1	3e-28	zinc-finger homeodomain protein 11
Swissprot	A2XLF4	3e-29	ZHD11_ORYSI; Zinc-finger homeodomain protein 11
Swissprot	Q10DV5	3e-29	ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBL	A0A0D3FNA9	2e-61	A0A0D3FNA9_9ORYZ; Uncharacterized protein
STRING	OBART03G32070.1	3e-62	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9204	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14687.1	1e-09	homeobox protein 32