PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G30710.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 651aa    MW: 69579.3 Da    PI: 7.4841
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G30710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07213233526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  OBART03G30710.1 213 PCPDFRK-GVCRRGDMCEYAHG 233
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.63E-12173IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.8E-14173IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.735170IPR020683Ankyrin repeat-containing domain
PfamPF136373.2E-8348No hitNo description
PROSITE profilePS5008812.8763065IPR002110Ankyrin repeat
PRINTSPR014155.7E-53146IPR002110Ankyrin repeat
PRINTSPR014155.7E-54963IPR002110Ankyrin repeat
SMARTSM003561.1E-5208234IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4212235IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5213233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375213235IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4241271IPR000571Zinc finger, CCCH-type
SMARTSM0035637243266IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:1.25.40.201.8E-14502514IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MVAATYGSLA VLRLLLSLPS VDVNRRCGSD GTTALHCAAS GGSPSCVEAV KLLLAAGADA  60
DATDASGYRP ADVISVPPKM FDAKIALQDL LGCPKAGHGV LRVVTRAANS MSSPVSSPTA  120
EDARSPSAAV MMTTKFADLP RVVTSEKKEY PVDPSLPDIK NSIYASDEFR MYSFKIRPCS  180
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG VCRRGDMCEY AHGVFECWLH  240
PAQYRTRLCK DGTSCNRRVC FFAHTTDELR PLYVSTGSAV PSPRASATAT MEMAAAMGLM  300
PGSPSSVSAV MSPFTPPMSP SGNGMPPSLG WQQPNVPTLH LPGSSLQSSR LRTSLSARDM  360
PADDYSLMQD IDSQLINDLC YSRIGSSTGN HTSRTKSLNP SNLDDLFSAE MVSSPRYSNA  420
DQGGMFSPSH KAAFLNQFQQ QQQALLSPIN TVFSPKSVDN QQLPSHSSLL QASLGISSPG  480
RMSPRCVESG SPMNSHLAAA LAQREKQQQT MRSLSSRDLG PSAARASGVV GSPLSSSWSK  540
WGSPSGTPDW GVNGEELGKL RRSSSFELRS GGDDPDLSWV HTLVKESPPE KQVTTAESIN  600
SVGPSPLMPP SVSNGEGPSL NAPLDGHDQA AVIGALLEQM QLDQHIGSLA T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632054.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA3ALR00.0A3ALR0_ORYSJ; Uncharacterized protein
STRINGORGLA03G0281500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-177CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]