PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART03G29180.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 335aa    MW: 36781.3 Da    PI: 6.7986
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART03G29180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.92.3e-102522852255
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +yps++e++ LA+++gL+++qV++WF N+R ++
  OBART03G29180.1 252 WPYPSEAEKAALAESTGLDKKQVTNWFINQRKRH 285
                      58*****************************885 PP
2ELK34.73.7e-12204224222
              ELK   2 LKhqLlrKYsgyLgsLkqEFs 22 
                       +++L++KYsgyL+sL++E+s
  OBART03G29180.1 204 TRRHLMNKYSGYLNSLWTEIS 224
                      69******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.1E-1967111IPR005540KNOX1
PfamPF037901.1E-1969105IPR005540KNOX1
SMARTSM012561.2E-27121172IPR005541KNOX2
PfamPF037911.1E-21125170IPR005541KNOX2
SMARTSM011887.1E-5203224IPR005539ELK domain
PROSITE profilePS512139.027203223IPR005539ELK domain
PfamPF037892.3E-8205224IPR005539ELK domain
PROSITE profilePS5007112.034225288IPR001356Homeobox domain
SMARTSM003892.1E-12227292IPR001356Homeobox domain
SuperFamilySSF466896.42E-18227296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-25232289IPR009057Homeodomain-like
CDDcd000862.40E-13234289No hitNo description
PfamPF059206.9E-17245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEQLHLLLAS GGGSKASTTI TPFCLARDHA STSSPSPAAV AAPPPEATSG SEQSIHGSGT  60
GLQSSEAMIK AKIMSHPLYP SLLRAFVDCK KVGAPPEVVG RLSSLAVVTD VPQYSGDRWL  120
PAQQPAADPE LDQFMETYCY MLTRYGQELA RPIQEAEEFF RGIEEQIDSL ALDEDVIYDY  180
EDEVAGGLPE KSAAFGENEV TTTTRRHLMN KYSGYLNSLW TEISNKKKNS TGHLPRDARH  240
KLLQWWHLHY RWPYPSEAEK AALAESTGLD KKQVTNWFIN QRKRHWKPKP AAAMDAGFLQ  300
MHPRYGASSS SSPAAALRVE DGGGGRSAYH PRGGP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6950040.0HQ695004.1 Oryza sativa fused compound leaf 2 (FCL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879711.10.0putative homeobox protein knotted-1-like 5
SwissprotQ75LX90.0KNOS5_ORYSJ; Putative homeobox protein knotted-1-like 5
TrEMBLA0A0D3FMA90.0A0A0D3FMA9_9ORYZ; Uncharacterized protein
STRINGOBART03G29180.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47462950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-65KNOTTED-like from Arabidopsis thaliana