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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OBART03G28270.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
LBD |
Protein Properties |
Length: 191aa MW: 20108.8 Da PI: 9.0082 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OBART03G28270.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 124.4 | 5.9e-39 | 24 | 117 | 7 | 100 |
DUF260 7 vlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+lrr+Ca++Cv+apyfp +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdP+yG+vg i++lqqq+e l+a+lal+++e
OBART03G28270.1 24 LLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPIYGCVGAISSLQQQVEALQAQLALAQAE 117
589***************************************************************************************9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MRDVVVAVGG GTKAASRQQG QGGLLRRRCA AGCVFAPYFP PGEPHKFANV HKVFGASNVS 60 KLLQEIPVQH RGDAVSSLVY EANARVRDPI YGCVGAISSL QQQVEALQAQ LALAQAEMVR 120 LRMSNDYIGR RLRARGCGGG GGGGGGSTTT TTGSPSSMSS PAKTAEPEPL CKPTPELDMV 180 VDQPDFGFWS Y
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC139174 | 0.0 | AC139174.3 Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence. |
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CP012611 | 0.0 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |